Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00852 ATGCAGAGAGGACCTAATTTAAGACATCGTAGACCGCAAGACATGATTTGGCTCCTCTTTTTAGTTGTAATGCCTGTAAATTCATGGACCCTCCCCTCCTCATCTATCCTAATCCTAATCCTCTGTTTTTCAGTCTTCTACCTCTTCCCTCTCCCAACTTCCGCCATTAACGAACAGGGTCAAGCTCTACTCACTTGGAAGCTGAGTTTCAATGGATCAAACCAGGCTCTACGTAATTGGGACCCTAACAACCAAACTCCATGTGGGTGGTTTGGAATCACTTGCAACACAAACAGAGAAGTAGTGGAAGTAGTACTGAGGGACGTGGAATTACCTGGTGAACTTCCTTCGAATTTCTCTTCGCTCTCGTCGTTGAACAGGCTCGTCTTGTCTGGTGTGAACCTCACCGGTTCCATTCCTAAAGAGATCGGTGTTCTTAGCCAGCTCCGGACCTTGGAACTTAGTGACAATGGCTTAACTGGAGAAATCCCAAGTGAAATATGTGCCTTGCTAGATCTCGAACAGCTTGACCTCAATTCGAATCATCTCGAAGGATCAATACCTGCAGGGATCGGGAATCTCACGAACTTGAAGGAGCTGATTCTGTATGACAATCAGTTAAGTGGTGAAATTCCCATTAGTATAGGAAATTTGAAGCAGCTTGAAGTGATTAGAGCTGGAGGGAACAAGAACTTACTTGGTTCTGTGCCGGAAGAAATTGGTAACTGCAGCAGTTTGGAGATTCTTGGTCTAGCTGAAACAAGCATCTCGGGGTTCCTTCCATCCAGTCTTGGCCGCCTCAAGAAGCTTCAAACATTGGCAATCTATACTACGCTACTCTCCGGCCAGATTCCTCATGAACTTGGCGACTGCACTGAGCTCCAGAACGTTTATCTCTATGAGAACTCGCTCTCCGGCTCGATCCCGAGCACGTTAGGAAGGTTACAAAATCTCCAGAGTTTGCTAGTATGGCAGAACAATTTGGTCGGCGTTATACCGGTGGAGCTAAGTAAGTGTAACCAATTATTGGTCATCGACATTTCAATTAATTCCTTGACAGGAAGCATTCCTTCAACGTTTGGGAACTTGACATTGCTCCAAGAATTGCAACTGAGTTCAAATCAATTATCCGGTGAGATTCCGAAGGAGATTGGAAGCTGTTCGAGAATCACTCATATCGAGCTTGATAATAACCAGCTCACTGGTACGATCCCTTCTGAATTGGGAAATCTCACCAATCTGACATTGCTGTTCTTGTGGCAAAACAAGCTCGAGGGGAGTATTCCACCCACCATTTCCAATTGTGGCAACCTCGAGGCTTTGGATTTATCATTGAACGCCTTGACAGGTTCGATTCCGACTGGAATTTTCGAGTTGAAAAAGCTTTCCAAGCTTCTCCTCCTCTCCAACAACCTCTCTGGTGTGATATCGCCGGCGATTGGTAACTGTTCGTCTCTGTTTCGGTTACGAGCGAATGACAACAAGCTCACAGGAGAAATTCCGCCGGAGATTGGGAATTTGAAGAACTTGATTTTCCTCGACCTTGGAAACAATCGCCTCACTGGAGCGTTGCCTCCGGAGATCTCCGGCTGTAGAAATTTGACATTCCTCGATTTGCATTCGAACTCTCTAACAAAATCTCTTCCAGAAGAATTCAACCAGCTTTCTTCTCTTCAGTATGTTGATCTCTCAAATAATCAAATCGAAGGGACGCCGAATCCGAGTTTTGGAGCTTTCAACTCGCTCACGAAACTAATTCTCTCAAACAACCACTTCTCGGGGCCTGTACCGACTGAAATCGGTTCCTGCTTGAAACTTCAGTTACTGGATTTAAGTTGCAATCAGCTCTCTGGAAATGTTCCTCCGAGCTTAGGGAAGATTCCTTCGCTAGAAATTGGTCTCAATCTGAGCTTAAACCATCTAACCGGCGAGATTCCCCCGGAGTTTGCAAATTTAGACAAGCTAGGGTCATTGGACCTCTCTTACAACCAACTCTCAGGCGACCTCCACATTCTCGCAGACCTGAAAAATCTCGTAGTCCTCAATGTATCACACAACAATTTCTCAGGGCGTGTGCCAGAGACGTCATTCTTCACGCAGCTCCCTCTAAGCGTCCTCTCAGGGAATCCGGACTTGTGCTTCGCCGGCGAAAAATGTTACGCCGATAACCACACCGGCGGCGGTCACCACACGTTAGCGGCTCGAGTGGCCATGGTGGTGTTACTGTGCACGGCGTGCGCACTGCTACTAGCGGCAGTATATATCATTCTCAAAGATAGACATTCGTGTCGAGGATGCTTCAATGGGTCCCGCGGTGAAGATTCAGACGCCGCCTTTGATAGCGACCTGGAGCTTGGCTCAGGCTGGGAAGTGACATTATACCAGAAGCTTGATCTTTCAATCTCCGACGTAATCAACTGCTTAACGCCGGCCAACGTCATCGGCCGCGGCAAGACCGGCGTTGTGTACAGAGTCTGCATCTCATCAGGTCTAATAATCGCCGTGAAGCGATTCCGATCATCAGATAAGTTCTCGGCGGCAGCGTTTTCATCCGAAATCGCAACACTGGCGAGAATCCGGCATCGGAACATCGTCCGATTGCTAGGGTGGGGGGCGAATCGGAGGACGAAGTTACTGTTCTACGACTACTTGCCGAACGGGAATTTGGGCGAGTTGCTACACGAGGGGAATGGGCGCGTGGGGTTGGACTGGGAGAGTAGATTCAAGATAGCATTGGGAGTGGCGGAGGGTTTGGCTTATTTGCACCACGACTGCGTGCCGGCAATTTTGCACCGGGACGTGAAGGCTCACAACATTCTGTTGGGGGATCGCTACGAGGCGTGTTTGGCGGACTTTGGGCTCGCCCGCTTGGTTGAAGATGGTCCAAGCGGTTCGTCTTCCACGAACCCCCAGTTCGCTGGTTCTTACGGCTACTTTGCACCCGGAATTTCCCTACTTTGCACTAGCGACCGTTCTGAAGAAAGACCGACAATGAAAGACGTGGCAGCTCTTTTACGGGAGATCCAACAAGATCACTTGGCAAACGTAGCAGAGGCTGTCGACAAGCCGCCACGAAACAATAGCAACGCAACAAGTTTGGAAACAACATCATTTTCATCCTCTTCTACAGCTCGTGCGAGTCATTTGCTTTTCACGTTGCCTCTTCAGGAGTCATCACGTTGCTCGTATGTGTCATTGTCCTCATCAAGCACGTATACGCCGCGTGAACAATGA 3234 48.39 MQRGPNLRHRRPQDMIWLLFLVVMPVNSWTLPSSSILILILCFSVFYLFPLPTSAINEQGQALLTWKLSFNGSNQALRNWDPNNQTPCGWFGITCNTNREVVEVVLRDVELPGELPSNFSSLSSLNRLVLSGVNLTGSIPKEIGVLSQLRTLELSDNGLTGEIPSEICALLDLEQLDLNSNHLEGSIPAGIGNLTNLKELILYDNQLSGEIPISIGNLKQLEVIRAGGNKNLLGSVPEEIGNCSSLEILGLAETSISGFLPSSLGRLKKLQTLAIYTTLLSGQIPHELGDCTELQNVYLYENSLSGSIPSTLGRLQNLQSLLVWQNNLVGVIPVELSKCNQLLVIDISINSLTGSIPSTFGNLTLLQELQLSSNQLSGEIPKEIGSCSRITHIELDNNQLTGTIPSELGNLTNLTLLFLWQNKLEGSIPPTISNCGNLEALDLSLNALTGSIPTGIFELKKLSKLLLLSNNLSGVISPAIGNCSSLFRLRANDNKLTGEIPPEIGNLKNLIFLDLGNNRLTGALPPEISGCRNLTFLDLHSNSLTKSLPEEFNQLSSLQYVDLSNNQIEGTPNPSFGAFNSLTKLILSNNHFSGPVPTEIGSCLKLQLLDLSCNQLSGNVPPSLGKIPSLEIGLNLSLNHLTGEIPPEFANLDKLGSLDLSYNQLSGDLHILADLKNLVVLNVSHNNFSGRVPETSFFTQLPLSVLSGNPDLCFAGEKCYADNHTGGGHHTLAARVAMVVLLCTACALLLAAVYIILKDRHSCRGCFNGSRGEDSDAAFDSDLELGSGWEVTLYQKLDLSISDVINCLTPANVIGRGKTGVVYRVCISSGLIIAVKRFRSSDKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGELLHEGNGRVGLDWESRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEACLADFGLARLVEDGPSGSSSTNPQFAGSYGYFAPGISLLCTSDRSEERPTMKDVAALLREIQQDHLANVAEAVDKPPRNNSNATSLETTSFSSSSTARASHLLFTLPLQESSRCSYVSLSSSSTYTPREQ 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7862117 7866359 - Cp4.1LG18g08560.1 Cpe18g00852 485313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00852 1077 ProSiteProfiles Leucine-rich repeat profile. 654 676 IPR001611 GO:0005515
Cpe18g00852 1077 SUPERFAMILY Protein kinase-like (PK-like) 799 985 IPR011009 -
Cpe18g00852 1077 SUPERFAMILY L domain-like 84 334 - -
Cpe18g00852 1077 PANTHER OS01G0170300 PROTEIN 26 981 - -
Cpe18g00852 1077 SMART LRR_typ_2 315 339 IPR003591 -
Cpe18g00852 1077 SMART LRR_typ_2 363 387 IPR003591 -
Cpe18g00852 1077 SMART LRR_typ_2 146 170 IPR003591 -
Cpe18g00852 1077 SMART LRR_typ_2 436 459 IPR003591 -
Cpe18g00852 1077 SMART LRR_typ_2 411 435 IPR003591 -
Cpe18g00852 1077 SMART LRR_typ_2 194 218 IPR003591 -
Cpe18g00852 1077 SMART LRR_typ_2 675 699 IPR003591 -
Cpe18g00852 1077 SMART LRR_typ_2 579 603 IPR003591 -
Cpe18g00852 1077 SMART LRR_typ_2 532 554 IPR003591 -
Cpe18g00852 1077 SMART LRR_typ_2 555 578 IPR003591 -
Cpe18g00852 1077 SMART LRR_typ_2 507 531 IPR003591 -
Cpe18g00852 1077 Gene3D Ribonuclease Inhibitor 56 214 IPR032675 -
Cpe18g00852 1077 ProSitePatterns Protein kinases ATP-binding region signature. 814 836 IPR017441 GO:0005524
Cpe18g00852 1077 Gene3D Ribonuclease Inhibitor 228 462 IPR032675 -
Cpe18g00852 1077 Gene3D Ribonuclease Inhibitor 463 721 IPR032675 -
Cpe18g00852 1077 Pfam Leucine rich repeat N-terminal domain 57 96 IPR013210 -
Cpe18g00852 1077 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 980 1025 - -
Cpe18g00852 1077 Pfam Leucine rich repeat 532 592 IPR001611 GO:0005515
Cpe18g00852 1077 Pfam Leucine rich repeat 317 376 IPR001611 GO:0005515
Cpe18g00852 1077 ProSitePatterns Serine/Threonine protein kinases active-site signature. 929 941 IPR008271 GO:0004672|GO:0006468
Cpe18g00852 1077 SUPERFAMILY RNI-like 298 666 - -
Cpe18g00852 1077 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 26 981 - -
Cpe18g00852 1077 PANTHER OS01G0170300 PROTEIN 980 1025 - -
Cpe18g00852 1077 Pfam Protein kinase domain 812 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00852 1077 ProSiteProfiles Protein kinase domain profile. 808 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00852 1077 Gene3D Phosphorylase Kinase; domain 1 790 883 - -
Cpe18g00852 1077 SMART serkin_6 808 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00852 1077 Gene3D Transferase(Phosphotransferase) domain 1 884 985 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00852 - - - cmos:111429763 1807.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00839 Cpe-Chr6:5385336 Cpe18g00852 Cpe-Chr18:7862117 0 dispersed
Cpe17g00242 Cpe-Chr17:1577288 Cpe18g00852 Cpe-Chr18:7862117 0 dispersed
Cpe18g00852 Cpe-Chr18:7862117 Cpe04g01569 Cpe-Chr4:12287161 4.06E-14 wgd
Cpe18g00852 Cpe-Chr18:7862117 Cpe09g01014 Cpe-Chr9:8946550 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g792 . . . . . . . . . Cmo18g00141 Cma10g00113 Cma11g00083 Car10g00102 . . . . Bhi02g00489 . . . . . . Cla06g01679 . . . . . . Cone2ag0922 Cone16ag0085 . . Lsi02g00394 Csa01g00871 . Cme12g01675 . . . . . . . . . Cmo10g00117 Cmo11g00084 . Cma18g00183 . . . Cpe18g00852 Bhi08g01644 . . . . . . Cla01g01317 . . . . . . Lsi06g01569 Csa01g00130 Chy02g02597 Cme02g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002837 0 2 0 0 0 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 3 2 3 2 1 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63006 PF00069 Pkinase 7.10E-29 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00852 Cpe_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.085294 0.0