Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00859 ATGTGGTTTATTTTGCAAGTTGCAGTGCATGGCCTCGGCAGGATGGCATCATCAAGTTCTTACAACTCTCCTTGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGTCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAGATCTTTGGGGCCAGCAATGTGACAAAGCTGCTGAATGAACTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCGTATGAGGCCGAGGCCCGAGTCCGGGACCCGGTCTATGGCTGCGTCGGAGCCATCTCCTTCCTCCAAAGGCAAGTCCAGAGGCTCCAGAAGGAACTCGACGCTGCAAATGCCGACCTAATTCGGTACGCATGCAACGAGATACCTAATGCAGGAGTGAGTCATGTGGTTCAACCAAGCCCTGGTGCTCGCCCAAGAGCTTTGGATCAGTATCATACAAGTTCATCAACTGGGTATTACAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCACTGCCTTGGAATGAAAACTCTCCTGGAAATGACATCAATGAAGGAGGAGGGGATGGCAATATTTGA 594 48.82 MWFILQVAVHGLGRMASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPNAGVSHVVQPSPGARPRALDQYHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGDGNI 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7908787 7913606 - Cp4.1LG18g08740.1 Cpe18g00859 485320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00859 197 ProSiteProfiles LOB domain profile. 23 124 IPR004883 -
Cpe18g00859 197 PANTHER ELONGATED PETIOLULE 1 15 196 - -
Cpe18g00859 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 15 196 - -
Cpe18g00859 197 Coils Coil 103 130 - -
Cpe18g00859 197 Pfam Lateral organ boundaries (LOB) domain 24 121 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01574 Cpe18g00859 CCT
Cpe18g00859 Cpe20g00259 CCT
Cpe18g00859 Cpe20g00259 ECH
Cpe04g01574 Cpe18g00859 ECH
Cpe09g01010 Cpe18g00859 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00534 Cpe-Chr4:5794118 Cpe18g00859 Cpe-Chr18:7908787 8.91E-72 dispersed
Cpe05g01077 Cpe-Chr5:7130076 Cpe18g00859 Cpe-Chr18:7908787 7.07E-53 dispersed
Cpe16g00033 Cpe-Chr16:429658 Cpe18g00859 Cpe-Chr18:7908787 1.98E-51 dispersed
Cpe18g00859 Cpe-Chr18:7908787 Cpe05g01559 Cpe-Chr5:10711597 6.36E-48 dispersed
Cpe01g02332 Cpe-Chr1:19603996 Cpe18g00859 Cpe-Chr18:7908787 1.43E-69 wgd
Cpe18g00859 Cpe-Chr18:7908787 Cpe20g00259 Cpe-Chr20:1458285 8.00E-67 wgd
Cpe18g00859 Cpe-Chr18:7908787 Cpe04g01574 Cpe-Chr4:12321467 5.02E-119 wgd
Cpe18g00859 Cpe-Chr18:7908787 Cpe09g01010 Cpe-Chr9:8933543 1.01E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50932 PF03195 LOB 6.10E-42 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00859 - - cmos:111430134 358.607