Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00862 ATGGCGTCCTCCCGCTCGTTGTCGAAGTTTTTGCTGAACTACTTCGGCTTTGACTGTTGCAGCCCCGAAACGCTGTCGGATCATGGCTTCTCTCGCCATCTCAAGCGCTTTAATGTTGGCGAGGACTGCCCTGTTTTTGATGGCTTATTCGGCTTCTGCCAGGCCTCTGCTGGCGGCTCCATTGGTGCTGCCGTCAAGCTCAATCGCGGCGATGCTGATATTGCTATCAATTGGGCCGGTGGGCTTCATCATGCTAAGAAGTCTGAGGCCTCTGGTTTTTGTTATGTCAATGATATTGTGTTGGGCATTCTTGAGCTGCTGAAGTACCACAGGCGTGTATTATATATTGACATTGATGTCCATCATGGTGATGGTGTGGAGGAGGCATTTTACACTACCGACAGGGTAATGTCGGTCTCCTTCCATAAATTTGGGGATTTCTTTCCAGGGACTGGACACATTAAGGATGTTGGGGCAGGGTCTGGTAAAAACTATGCTCTTAATGTCCCTTTAAATGATGGAATGGATGATGACAGTTTTCGTGGTCTGTTTAGGCCACTCATTCAAAAAGTCATGGAGGTGTATCAGCCAGAGGCAGTAGTACTCCAATGTGGTGCTGATTCATTAGCTGGTGATAGGTTGGGGTGCTTCAACTTATCTGTGAAGGGCCATGCTGATTGTCTTCGTTTCTTGAGATCATTTAACGTTCCTTTAATGGTATTAGGTGGTGGAGGATATACAATCCGCAATGTTGCTCGCTGCTGGTGTTACGAGACAGCGGTTGCTGTTGGAGTTGAACCAGACAACAAATTGCCTTACAACGAGTATTTCGAGTATTTTGGACCTGATTACATGCTTCACATCGAACCATCCAACATGGAGAATCTAAATTCACCTAAAGATATGGAAAAAATAAGGAACACCCTGCTGGAGCAACTCTCTAGACTCCCACATGCACCCAGTGTACCTTTCCAGATGACTCCCTCGTCCGAAGTCCCCGAAGAGGTGGAAGAGAACATCGACCGTAGACCGAAACGCCGCATTTGGAACGGTGAGGATTATGATTCTGCACCTGAAGAAAACAGAAAGCGACCAAACATCAGTGAAGCGCATGGTGTAAATCATCTGACGAGGGACGTCGTAGATGGTATGGAGGAAGATAAAAACATGGACCATCGACCTTGCTGA 1188 47.14 MASSRSLSKFLLNYFGFDCCSPETLSDHGFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKYHRRVLYIDIDVHHGDGVEEAFYTTDRVMSVSFHKFGDFFPGTGHIKDVGAGSGKNYALNVPLNDGMDDDSFRGLFRPLIQKVMEVYQPEAVVLQCGADSLAGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYMLHIEPSNMENLNSPKDMEKIRNTLLEQLSRLPHAPSVPFQMTPSSEVPEEVEENIDRRPKRRIWNGEDYDSAPEENRKRPNISEAHGVNHLTRDVVDGMEEDKNMDHRPC 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7920825 7924030 - Cp4.1LG18g08770.1 Cpe18g00862 485323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00862 395 PANTHER HISTONE DEACETYLASE 18 365 - -
Cpe18g00862 395 MobiDBLite consensus disorder prediction 320 370 - -
Cpe18g00862 395 CDD HDAC_classI 21 262 - -
Cpe18g00862 395 Pfam Histone deacetylase domain 39 260 IPR023801 -
Cpe18g00862 395 PIRSF HDAC_I_euk 10 392 IPR003084 GO:0004407|GO:0016575
Cpe18g00862 395 PRINTS Histone deacetylase signature 158 171 IPR003084 GO:0004407|GO:0016575
Cpe18g00862 395 PRINTS Histone deacetylase signature 58 78 IPR003084 GO:0004407|GO:0016575
Cpe18g00862 395 PRINTS Histone deacetylase signature 99 115 IPR003084 GO:0004407|GO:0016575
Cpe18g00862 395 PRINTS Histone deacetylase signature 37 54 IPR003084 GO:0004407|GO:0016575
Cpe18g00862 395 PRINTS Histone deacetylase signature 175 193 IPR003084 GO:0004407|GO:0016575
Cpe18g00862 395 PRINTS Histone deacetylase superfamily signature 197 207 IPR000286 -
Cpe18g00862 395 PRINTS Histone deacetylase superfamily signature 80 103 IPR000286 -
Cpe18g00862 395 PRINTS Histone deacetylase superfamily signature 112 127 IPR000286 -
Cpe18g00862 395 PANTHER HISTONE DEACETYLASE 6 18 365 - -
Cpe18g00862 395 MobiDBLite consensus disorder prediction 335 370 - -
Cpe18g00862 395 Gene3D Histone deacetylase domain 14 323 IPR037138 -
Cpe18g00862 395 SUPERFAMILY Arginase/deacetylase 32 315 IPR023696 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00862 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - csv:101204443 743.036
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01577 Cpe18g00862 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00795 Cpe-Chr16:7775611 Cpe18g00862 Cpe-Chr18:7920825 5.86E-141 dispersed
Cpe18g00702 Cpe-Chr18:6957198 Cpe18g00862 Cpe-Chr18:7920825 3.69E-22 dispersed
Cpe18g00862 Cpe-Chr18:7920825 Cpe04g01577 Cpe-Chr4:12326760 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g806 . . . Bda15g00544 Bpe12g00667 . . . . . . Cma11g00075 Car10g00090 Car11g00067 . . Cpe04g01577 Bhi02g00504 Tan09g2293 . . Hepe09g0228 . . Cla06g01690 . . . . . . Cone2ag0926 Cone16ag0079 . . . . . . Blo13g00141 . . . . . . Bma08g00086 . Cmo10g00105 Cmo11g00076 . . . . . Cpe18g00862 . . . . . . . . . . . . . . Lsi06g01584 Csa01g00119 Chy02g02608 Cme02g02005
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000680 1 7 2 3 3 3 4 3 3 2 2 3 4 3 3 4 3 5 4 2 3 3 3 3 3 2 3 5 7 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00862 Cpe_Chr18 FPKM 8.503065 8.579164 8.889564 8.459581 8.919908 11.687387 8.316021 12.389485 10.892867 10.534199