Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00865 ATGTTGACAGAACAATGTGGCTGCAGGCCCATGACACAAGAGAATCTATCCTCTCTTTCTCTCTTTTCCTTTGTGGTTATGAGAGCAAGAATGTCTTTTTCTTTGTATACTTCCAACCCACTAAAAACACATTCTTGTCATTTTCATTCTCATATCAATTCTCATTGTTCTTTGCGCATTTGGAGAGCGAAAGAGACAGAGAGAGAGAGAGAGCTAAGAATGGAAGAGGAGTTTCAAGGAAGGCCAGCAGAGTTACAACTGCAATGCTGCAGTGCAAGGATCATGTCACCGGAGATCGTCGAGATTGGAGACGAAAGTAAGACTATTATCAGTAGCAGTGACCGTGGTGCAACCGATGTCTATGTCGCCGTTGGTAAAGATGATATAGATGTGCTTAAATGGGCCCTTGATCATGCTGTCTCACCTGGTTGTTGTGTCTTTCTTATCCATGTTTTTCCTCCTCTCACCTACATCCCTACTCCAGTTGGAAGATTAGCAAGGAGTCAACTGAGCCAAGAACAACTGAGAGTGTACATCAATGAGGAAAACAATAGAAGGAGAAATCTCTTGCAAAAGTACATCCGGTTATGCACTGACGCCAAGGTGACAGTGGACACATTACTTCTGGAGAGCAACACGACATCCAAAGCAATCCTTCAACTAATTCCAGTGCTCAACATCACCAATTTAGTCATAGGAACCAAAAATCCACTTTCCACAAGGCTATTGGGGAAAAGAATGGCGAAAGGAGAGTTTGTGAAAAAGAATGCACCAGAATGTTGCGAGGTTACCATTGTTTATGAGGGCAAAAAGGTCGATGAGCGTCACCAGGAAATGGGGTTGCTTCCTTCTTCTCAAAACTCCGGTTGCCGTCGCCGGCGCTCCGGCAAGAACTTGTTCGAGTGTGTGTGCTTGTTCAGCAGCCCGTGTATCAGAGTCATGAATCCTTACGACCATAGATACGCCGATCCCAATTCCTACCGCGAGCGCCGAAGTGACCTAGTGGGTCCACAGCCTGCTGCGCCGCCGCCGATGGCAGGGCGTGAATCTATGTACAAAGGCTTTCATCCTCCTCCAGTACCATACTATGGCCGTGAAAGAGGTGGGGGAGGTGCTTTACCTAATGCTGGAGGTTTCAATGGCTTCCCGCGGTTTCAGCCTCCCGCAGGACCGTTCAATATCGGTCGCAGTGGCAATGATTTCGGTAGCGGCGGAAGGAGAATGTTTGATTCTGGGAGGGGCGGGAATATGGGTTTTGGAGGTAGACGTGGTGGAGGAACGGGATTTGAGGGGCGTGTTGGCGGACGTGGGGCTGGACGGGGTGGTTCATCAAGAGGGGACTTAGATAACATAGTTCTTCCGAGTCAAAATTTTGGGGATTTGGTCCCTTTTGAAAAGAACTTCTACACTGAGTGTCCTTCTGTGCGTGCAATGACGGAGTCCGAAGTCAAGATGTACAGAGAGAGGCGTGATATTAGAGTGGAAGGATACGATGTCCCAAAACCGATTCGGAGTTTTCAGGAGGCAAATTTTCCTGCTTACTGCCTTGATGTGATTGCGAAATTGGGATTTGTTGAACCAACACCAATTCAGGCTCAAGGATGGCCGATGGCCATGAAAGGAAGAGATTTGATTGGCATTGCTGAAACTGGCTCTGGGAAGACTCTGGCCTATCTACTGCCAGCTTTAATACACATTAGTGCCCAGCCTCGTTTGGTGCATGGTCAAGGTCCCATTGTATTGGTGTTAGCGCCCACCAGAGAATTAGCTGTTCAAATTCAACAAGAGGTCACAAAATTTGGGTTGCGTGCTAATATTAGAAGTACTTGCATTTATGGTGGGGCTCCTAAGGGCCCTCAAATTCGTGATCTCAAAAATGGTGTTGAGATTGTTATTGCTACACCTGGTCGGCTCATAGATATGCTTGAAGCTGGCCACACAAACCTGCAGCGAGTTACTTATCTTGTTTTGGATGAAGCTGATAGAATGCTGGACATGGGATTTGAGCCACAAATAAGGACAATCGTGAGCCAAATCCGACCTGATAGGCAGACATTATATTGGAGTGCCACATGGCCAAGGGAGGTTGAAAAATTGGCTAGGCAATTTTTACATGATGCGTATAAGGTGATTATTGGTTCATCAGATCTTAAAGCTAACCAGTCAATAAACCAAGTCGTCGAAGTTTTGCCAGAGGCTGAGAAATATAGAAGGTTAATAAAATTGCTTGTAGAAGTGATGGATGGTAGCCGTATTCTGATTTTTGTGGAGACAAAAAAGGGATGTGATAAAGTAACAAGGCAATTGAGAATGGATGGATGGCCAGCTCTATCCATTCATGGGGATAAAAAGCAGGCTGAAAGGGACTTGGTTTTGTCCGAGTTTAAGAGTGGAAGAAACCCAATAATGACAGCCACTGATGTGGCTGCAAGAGGGCTTGAGGAAGGTTCTATTGTGCAGTGCACGATGATTGTGAGACTGCTTGGTTCTGTCTCCTATTTGAATCTGCATATGCTTTTTGTTTCTTTCTCCGGACTAAAGAGATCCTTTGCTTCCCAATCAATGTGCCCTAGTAAGGATAGTGAGAAGGTAGAGACTTTGATGAGTAAGGTGCCTGAGATTTTGGTCCTCTATAGTTATCCGAGCATTCTATTGGTACCCATCCACAATTATGGAGCTGATGTGAAAGATATAAAATGTGTGATCAACTATGATTTCCCATCAAGCCTCGAGGATTATGTCCACAGAATAGGCCGAACGGGGCGTGCTGGTGCAAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGCGAAACACGCCAGAGAGCTTATAAAGATACTGCGAGAAGCAGGGCAGATCGTCTCCCCTGCATTGTCTGCTTTAGCCTCGTCTAGTGCCACTGGAGGTTCTAGCTCTAAATACCGCCCTCAAGGACACAGAGGCTTTGGTGGTAACCGAACAATGGTTTCAGGACCAAATGCGATCCCTATTGGTTTGACGAGACCAAGGCCTCGCTAG 3021 46.14 MLTEQCGCRPMTQENLSSLSLFSFVVMRARMSFSLYTSNPLKTHSCHFHSHINSHCSLRIWRAKETERERELRMEEEFQGRPAELQLQCCSARIMSPEIVEIGDESKTIISSSDRGATDVYVAVGKDDIDVLKWALDHAVSPGCCVFLIHVFPPLTYIPTPVGRLARSQLSQEQLRVYINEENNRRRNLLQKYIRLCTDAKVTVDTLLLESNTTSKAILQLIPVLNITNLVIGTKNPLSTRLLGKRMAKGEFVKKNAPECCEVTIVYEGKKVDERHQEMGLLPSSQNSGCRRRRSGKNLFECVCLFSSPCIRVMNPYDHRYADPNSYRERRSDLVGPQPAAPPPMAGRESMYKGFHPPPVPYYGRERGGGGALPNAGGFNGFPRFQPPAGPFNIGRSGNDFGSGGRRMFDSGRGGNMGFGGRRGGGTGFEGRVGGRGAGRGGSSRGDLDNIVLPSQNFGDLVPFEKNFYTECPSVRAMTESEVKMYRERRDIRVEGYDVPKPIRSFQEANFPAYCLDVIAKLGFVEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALIHISAQPRLVHGQGPIVLVLAPTRELAVQIQQEVTKFGLRANIRSTCIYGGAPKGPQIRDLKNGVEIVIATPGRLIDMLEAGHTNLQRVTYLVLDEADRMLDMGFEPQIRTIVSQIRPDRQTLYWSATWPREVEKLARQFLHDAYKVIIGSSDLKANQSINQVVEVLPEAEKYRRLIKLLVEVMDGSRILIFVETKKGCDKVTRQLRMDGWPALSIHGDKKQAERDLVLSEFKSGRNPIMTATDVAARGLEEGSIVQCTMIVRLLGSVSYLNLHMLFVSFSGLKRSFASQSMCPSKDSEKVETLMSKVPEILVLYSYPSILLVPIHNYGADVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSATGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7938424 7945117 - Cp4.1LG18g08750.1 Cpe18g00865 485326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00865 1006 Pfam Helicase conserved C-terminal domain 734 924 IPR001650 -
Cpe18g00865 1006 PANTHER LD32873P 450 814 - -
Cpe18g00865 1006 PANTHER LD32873P 892 976 - -
Cpe18g00865 1006 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 450 814 - -
Cpe18g00865 1006 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 892 976 - -
Cpe18g00865 1006 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 128 243 - -
Cpe18g00865 1006 CDD SF2_C_DEAD 723 933 - -
Cpe18g00865 1006 Gene3D - 468 709 IPR027417 -
Cpe18g00865 1006 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 535 710 IPR014001 -
Cpe18g00865 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 726 950 IPR027417 -
Cpe18g00865 1006 CDD DEADc_DDX5_DDX17 516 710 - -
Cpe18g00865 1006 MobiDBLite consensus disorder prediction 327 351 - -
Cpe18g00865 1006 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 656 664 IPR000629 -
Cpe18g00865 1006 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 738 963 IPR001650 -
Cpe18g00865 1006 Gene3D HUPs 120 249 IPR014729 -
Cpe18g00865 1006 SMART helicmild6 763 924 IPR001650 -
Cpe18g00865 1006 Gene3D - 710 966 IPR027417 -
Cpe18g00865 1006 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 504 532 IPR014014 GO:0003724
Cpe18g00865 1006 SMART ultradead3 523 726 IPR014001 -
Cpe18g00865 1006 CDD STK_N 120 269 - -
Cpe18g00865 1006 MobiDBLite consensus disorder prediction 965 1006 - -
Cpe18g00865 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 712 IPR027417 -
Cpe18g00865 1006 Pfam DEAD/DEAH box helicase 528 699 IPR011545 GO:0003676|GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00865 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - csv:101203955 850.892
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01529 Cpe-Chr2:13010067 Cpe18g00865 Cpe-Chr18:7938424 1.30E-11 dispersed
Cpe02g01721 Cpe-Chr2:14093445 Cpe18g00865 Cpe-Chr18:7938424 2.54E-26 dispersed
Cpe03g01071 Cpe-Chr3:8855216 Cpe18g00865 Cpe-Chr18:7938424 2.91E-26 dispersed
Cpe10g00736 Cpe-Chr10:4212863 Cpe18g00865 Cpe-Chr18:7938424 7.91E-33 dispersed
Cpe20g00679 Cpe-Chr20:4642393 Cpe18g00865 Cpe-Chr18:7938424 1.45E-28 dispersed
Cpe18g00865 Cpe-Chr18:7938424 Cpe03g00574 Cpe-Chr3:3421535 9.68E-23 wgd
Cpe18g00865 Cpe-Chr18:7938424 Cpe04g00541 Cpe-Chr4:5852039 1.86E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g811 . . . . . . . . . . Cma10g00099 . Car10g00086 . . . . Bhi02g00510 . . . . . . Cla06g01693 Cam06g1881 Cec06g1928 Cco06g1933 Clacu06g1837 Cmu06g1779 Cre06g2594 Cone2ag0927 . . . . . . . . . . . Bpe07g00856 . . . . Cmo10g00101 . . . . . . Cpe18g00865 . . . . . . . . . . . . . . Lsi06g01588 . Chy02g02611 Cme02g02008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011968 0 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00865 Cpe_Chr18 FPKM 0.036087 0.0 0.0 0.041425 0.0 0.0 0.0 4.371247 4.792775 5.920857