Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00866 ATGTATAAATTCACAACACAAACACAAACCCCAAATAGCCAAACAGAAAACAGAGGACGGATAATTTCAAATATGAATAGAAATCATAAGGCAAGAGCCGTTCTTCTTACTGCTATCGAAGTGTTCATGATTCTTCTATGTGCTGGTTGGGTTTCTCTGTGGCTATTGAAACCCACAGATCTCTGGACAAGAAAATGGCGTGTTGCTGAAAACACTGCCCGAGCATCTGTATTTGGATACTATGGTCTCAACTTTGTGGTGTATACCTTTCCTGTTGTTGCTCTGAACAGGGCTTTTGATCTTCTTCTTGAATTTTTTTCTTTTTTTTTTCGCTACAGGCAAACGAAGTTTTCAACCTTTTCCAATACTCTTTCGAACCCACTTGTTGTGAACAGCTATGTGGGTATTTTATCTGGAATTGAGCTTCTGGGTGTTGCTTTGTTTCTCCTCTTCCTGGCTTGGACGTTCTATGCTCGAATATCTAAAGATTTCAGAAAGTTGATGCCCGAAGAATCACTCAACTTGAAGATATGGGAACTCAAGTATTTAAGAGTAGCCACCAGGTTTGGTTTGCTAGCAGAGGCCTGTTTGGGGCTGCTTCTTCTGCCTGTCTTGAGAGGGTTGGCTCCATTTCGGCTAATTGGCATTCAGTTTGAAGCTTCAGTGAAGTATCACGTCTGGCTTGGCACTGCAATGAACACCGGCCGGATTTACATCGCCGGGGAGATTACTTTGATTACAGGATTAGTGATTTGGATCACTTCCCTGCCTCAGATAAGGAGAATCAAATTTGAGATCTTCTACTACACACACCATTTATACATTGTCTTTTTTGTGTTCTTCTTGTTTCATGCTGGAGATAGACACTTTTACATGGTATTTCCTGGACTGTTTCTCTTTGCCATTGATAAGATCCTCCGAATTATTCAGTCTAGAACCGAAACGTGTGTCGTCTCGGCTCGAGTCCTCCCCTGCAAAGCTGTGGAACTAACTCTGCCAAAAGACCAGAGGCTGAAGTACAAACCAACTAGCGTTGTGTATGTGAAGATACCAAGGATTTCCAGATTTCAGTGGCATGCTTTCAGCTTGATTTCCAGCTCGAGTGTTGATGATGAAACAATGTCGATCGTCGTTAAATGTAATAAGTCATGGACGAAGTCTTTGTATGAGATAATCAACACCGAACGAGAGGGAGAGTCGGATCAGTTGAAGTGCATCTCCGTTGCAGTCGAGGGCCCTTATGGACCTGCCTCCTTGGACTTCCTAAGATATGATCACTTGATTCTGATTGCTGGAGGAATTGGAGTAACCCCACTTTTGAGCATTTTACAGGAGATCACTTCTATGAAGAACAACACTAAATTCATCTGCCCTGCAAGAATCCAACTTATACACGTCATGAAAAAGTCCCACGACGTTGCGCTACTCAGCTCGATCTTACCTTTACTACTGAAACGCTTGGATGGAAAAATGCATTTGCAGCTCAAAGTATTCGTGACACAAGAACTGCAATCTGGTTCAACTCTAACCGAACTGCTAAACAAGTTCTCTCAAATGCAGACGATACAATCGAGCGTGAACCGTTCAAGCTATGCAGCACATGGGCTTGAAAGCTTAGGCTGGATGGCTGTAATTACTGGACTGATATCAATCGTGTTCTTTGTCGCCCTTATCGTCTTCAACCATATCGTCGTTCCAACCAAGAAAGCCTCCAAAAAGACAAAAGACAGAACCCCATCTTGGATCTCGGATCTTCTTCTGATGTCTTCCTTCGCTTTAGCTATCTTATCCGGGGTGGTCGTCGGGATTGTTTTACGACGGAGAAGACTGAAGAAAGGAAATCTAGCACTCATCCAAAGCCTAAACCAAACCAAGAACACAACTCCAAGTTCAGTAGCAAGAGGAAGTAGACAAGAAGAACATGAAATACATTTTGGAGAAAGGCCTAACTTCATAGAGATATTCTCCGACATCAACAACCCGGCAGGCAAATCGGACATCGGTGTGATCAGCAGCGGGCCGGAGGCAATGAACTTGTCAGTAGCCAAAGCTTGTAAGCAAATGTCTGGAGGTTCAAGGAAAGGCTCAAAGAAGAACAGACAGCAACTCAGTTTCCATTCCCTCAACTTCACTCTCTGA 2139 43.29 MYKFTTQTQTPNSQTENRGRIISNMNRNHKARAVLLTAIEVFMILLCAGWVSLWLLKPTDLWTRKWRVAENTARASVFGYYGLNFVVYTFPVVALNRAFDLLLEFFSFFFRYRQTKFSTFSNTLSNPLVVNSYVGILSGIELLGVALFLLFLAWTFYARISKDFRKLMPEESLNLKIWELKYLRVATRFGLLAEACLGLLLLPVLRGLAPFRLIGIQFEASVKYHVWLGTAMNTGRIYIAGEITLITGLVIWITSLPQIRRIKFEIFYYTHHLYIVFFVFFLFHAGDRHFYMVFPGLFLFAIDKILRIIQSRTETCVVSARVLPCKAVELTLPKDQRLKYKPTSVVYVKIPRISRFQWHAFSLISSSSVDDETMSIVVKCNKSWTKSLYEIINTEREGESDQLKCISVAVEGPYGPASLDFLRYDHLILIAGGIGVTPLLSILQEITSMKNNTKFICPARIQLIHVMKKSHDVALLSSILPLLLKRLDGKMHLQLKVFVTQELQSGSTLTELLNKFSQMQTIQSSVNRSSYAAHGLESLGWMAVITGLISIVFFVALIVFNHIVVPTKKASKKTKDRTPSWISDLLLMSSFALAILSGVVVGIVLRRRRLKKGNLALIQSLNQTKNTTPSSVARGSRQEEHEIHFGERPNFIEIFSDINNPAGKSDIGVISSGPEAMNLSVAKACKQMSGGSRKGSKKNRQQLSFHSLNFTL 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7946506 7952467 + Cp4.1LG18g08590.1 Cpe18g00866 485327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00866 712 Gene3D - 597 712 IPR039261 -
Cpe18g00866 712 PANTHER NADPH OXIDASE 237 711 - -
Cpe18g00866 712 Pfam FAD-binding domain 318 418 IPR013112 GO:0016491
Cpe18g00866 712 MobiDBLite consensus disorder prediction 1 20 - -
Cpe18g00866 712 Gene3D - 408 539 IPR039261 -
Cpe18g00866 712 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 408 482 IPR039261 -
Cpe18g00866 712 Pfam Ferric reductase NAD binding domain 424 685 IPR013121 GO:0016491
Cpe18g00866 712 PANTHER FERRIC REDUCTION OXIDASE 8, MITOCHONDRIAL 32 232 - -
Cpe18g00866 712 PANTHER FERRIC REDUCTION OXIDASE 8, MITOCHONDRIAL 237 711 - -
Cpe18g00866 712 SFLD Ferric reductase subgroup (FRE) 233 712 - -
Cpe18g00866 712 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 310 420 IPR017927 GO:0016491
Cpe18g00866 712 CDD NOX_Duox_like_FAD_NADP 317 472 - -
Cpe18g00866 712 SFLD Ferric Reductase Domain 233 712 - -
Cpe18g00866 712 Pfam Ferric reductase like transmembrane component 239 281 IPR013130 -
Cpe18g00866 712 PANTHER NADPH OXIDASE 32 232 - -
Cpe18g00866 712 PRINTS Cytochrome B-245 heavy chain signature 239 262 IPR000778 GO:0016020|GO:0016491
Cpe18g00866 712 PRINTS Cytochrome B-245 heavy chain signature 264 284 IPR000778 GO:0016020|GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00866 K00521 E1.16.1.7; ferric-chelate reductase [EC:1.16.1.7] - csv:101203723 1055.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00095 Cpe-Chr14:510342 Cpe18g00866 Cpe-Chr18:7946506 1.32E-86 dispersed
Cpe18g00866 Cpe-Chr18:7946506 Cpe04g01463 Cpe-Chr4:11654645 1.21E-24 dispersed
Cpe18g00866 Cpe-Chr18:7946506 Cpe14g00091 Cpe-Chr14:493359 1.96E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g813 . . . . . . . . . . Cma10g00097 . Car10g00085 . . . . . . . . . . . . . . . . . . Cone2ag0929 Cone16ag0077 . . . . . . . . . . . . . . . Cmo10g00100 . . . . . . Cpe18g00866 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011006 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00866 Cpe_Chr18 FPKM 0.482759 0.696119 0.506674 0.290129 2.104508 1.71655 3.041132 0.0 0.245503 0.380467