Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00870 ATGAGGGACTCTTCCCTTTTCCCTCCTCGACGTATTGGTTATCCAAGTTTTCGATTGATTTCTGGGGCGGCTTTTGAGGATTTGTTGCAAGAAATTCTACATGTTTCTGACCTGTCTGTGTTCTTCTTGCTGTACTTGAAATCTCGGTATAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGGGAAACAGCTGAAGAGGTTGTAAAGAAAGAAGCTCGGTTTGCTCGGGAGGTTGCAATGTTGTCTAAAGTGCAACATAAAAATCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACGGAGCTTTTATTAGGAGGGACCTTACGAAAGTACCTGCTCAATATGCGTCCACGGTGCTTGGACACACGCGTGGCTGTTGGTTTTGCGCTTGATATTGCTCGTGCTATGGAATGCCTTCACTCCCATGGCATCATTCATCGTGATCTGAAACCTGAGAACCTTCTGTTGACTGCAGATCACAAGACAGTTAAATTAGCTGATTTTGGCTTGGCAAGAGAAGAGTCGTTGACAGAGATGATGACGGCGGAGACGGGGACCTACCGATGGATGGCTCCAGAGAATGTAAGGCCTAGCGCAGAGAATCTTCCTGAGGAACTGGCTATGGTTCTAACATCATGCTGGCAGGAGGATGCAAATGCTCGTCCTAATTTCTCCCAAATTATTCAAATGCTACTCAATTACCTTTACACTATTTCACCCCCCGAGCCGATGATTGCTTCCCGATTTTTCTCTTCTGAGAACACGGTGTTTCCTCCCGAGTCTCCCGGAACAAGTTCACTGATGGCAGTCCGTGATGATTCAGGTGACACTCCGAAAGCTAAAACGGAAAATAATCCCAGAGGTTGTTTCTCCTGCTCCTATGACTGTTTCTAA 915 45.46 MRDSSLFPPRRIGYPSFRLISGAAFEDLLQEILHVSDLSVFFLLYLKSRYKNQTVAIKIVHKGETAEEVVKKEARFAREVAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTRVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPENVRPSAENLPEELAMVLTSCWQEDANARPNFSQIIQMLLNYLYTISPPEPMIASRFFSSENTVFPPESPGTSSLMAVRDDSGDTPKAKTENNPRGCFSCSYDCF 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7964351 7970242 + Cp4.1LG18g08640.1 Cpe18g00870 485331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00870 304 MobiDBLite consensus disorder prediction 267 290 - -
Cpe18g00870 304 SMART serkin_6 41 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00870 304 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 48 200 - -
Cpe18g00870 304 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 201 279 - -
Cpe18g00870 304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Cpe18g00870 304 SUPERFAMILY Protein kinase-like (PK-like) 49 266 IPR011009 -
Cpe18g00870 304 Gene3D Transferase(Phosphotransferase) domain 1 39 250 - -
Cpe18g00870 304 PANTHER SERINE-THREONINE PROTEIN KINASE 48 200 - -
Cpe18g00870 304 Pfam Protein kinase domain 48 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00870 304 PANTHER SERINE-THREONINE PROTEIN KINASE 201 279 - -
Cpe18g00870 304 ProSiteProfiles Protein kinase domain profile. 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00870 Cpe-Chr18:7964351 Cpe19g00798 Cpe-Chr19:6021387 2.04E-56 dispersed
Cpe01g02327 Cpe-Chr1:19575002 Cpe18g00870 Cpe-Chr18:7964351 1.01E-134 wgd
Cpe18g00870 Cpe-Chr18:7964351 Cpe03g00588 Cpe-Chr3:3541980 7.39E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63008 PF00069 Pkinase 4.30E-36 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00870 - - csv:101223021 464.922