Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00872 ATGGCGGCTATTTCCTTAGCTTCCGCTTCTACTTCCTCTAACCTCCTTTTCCTGCATGCCTCTGCTTCTCCCTCTTCCTCCCCTTCTTCTTCTTCCCTCTTCGTCAAACCCTCCTCCTCCTCCTCCTCCGCTATTAAGCTTTCTTCCTCCTTCTTGAACCCTTCTTCTATTCGCCCTCTCACATTCTCCTCCCCCGCTGTAAACCCTCCTCGTTCCTTGACGATTCGGGCCGCCCGTGGGAAATTTGAGAGGAAGAAACCCCATGTCAATATCGGCACAATTGGGCATGTCGACCATGGTAAAACCACGCTCACTGCCGCTTTGACCATGGCTTTGAGCAAAGCCCCAAAGAAATATGACGAAATTGACGCCGCACCTGAAGAGCGAGCTCGGGGTATTACGATTAACACCGCCACCGTTGAGTACGAGACTGAGAGCCGACATTACGCCCACGTTGATTGCCCTGGCCATGCTGATTACGTCAAGAACATGATTACTGGTGCTGCTCAAATGGATGGCGCAATTTTGGTGGTTTCGGGCGCTGATGGCCCAATGCCACAAACGAAGGAGCATATTTTGTTGGCTAAGCAAGTGGGTGTCCCCAATATGGTGGTGTTTCTCAACAAGAAGGATCAAGTTGATGACGAGGAGCTTCTGGAGCTTGTGGAATTGGAAATGCGTGAGTTGCTTTCTTCCTATGAATTCCCTGGTGATGATGTCCCAATTATTGCTGGTTCTGCTTTGTTAGCTTTGGAAGCTCTAATGGCAAACCCTGGTATTGTTAGAGGCGAAAATGAATGGGTGGATAAAATTTTTGAACTTATGGATGCTGTTGATAGCTACATTCCAATACCCGAAAGACAAACAGATCTTCCATTTTTGCTTGCTGTTGAAGATGTGTTCTCTATTACTGGTCGTGGTACTGTGGCGACCGGGCGTGTCGAAAGGGGCACGGTTAGGGTGGGAGAAACAGTGGATATTGTAGGACTAAGGGAAACTAGAAACACAACAGTGACAGGAGTGGAGATGTTTCAGAAAATTCTTGACGAGGCTTTGGCTGGGGATAATGTAGGGCTGTTGCTTAGAGGCGTTCAGAAGGCTGACATCCAAAGAGGGATGGTTTTATCCAAGCCTGGCACTATCACCCCACACACCAAGTTTCTTGCAGTTGTGTATGTGTTGAAGAAGGAGGAGGGTGGTAGACATTCACCCTTTTTTGCCGGTTACAGACCGCAATTTTACATGAGGACGACCGATGTCACAGGTAAGGTGACTTCGATTATGAACGACAAGGACGAGGAGTCGAAAATGGTGATGCCGGGTGACCGAGTTAAAATGGTTGTGGAACTGATTATGCCGGTGGCTTGTGAACAAGGAATGAGATTTGCCATCAGAGAAGGTGGAAAGACTGTAGGAGCTGGTGTGATTCAATCAATAATCGAGTGA 1446 48.13 MAAISLASASTSSNLLFLHASASPSSSPSSSSLFVKPSSSSSSAIKLSSSFLNPSSIRPLTFSSPAVNPPRSLTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALSKAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKKDQVDDEELLELVELEMRELLSSYEFPGDDVPIIAGSALLALEALMANPGIVRGENEWVDKIFELMDAVDSYIPIPERQTDLPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVDIVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKADIQRGMVLSKPGTITPHTKFLAVVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7971397 7972842 - Cp4.1LG18g08690.1 Cpe18g00872 485333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00872 481 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 86 286 IPR000795 GO:0003924|GO:0005525
Cpe18g00872 481 Gene3D Translation factors 420 480 - -
Cpe18g00872 481 CDD EFTU_III 382 476 - -
Cpe18g00872 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 301 IPR027417 -
Cpe18g00872 481 TIGRFAM EF-Tu: translation elongation factor Tu 78 481 IPR004541 GO:0003746|GO:0005525|GO:0006414
Cpe18g00872 481 Hamap Elongation factor Tu [tuf]. 77 481 IPR004541 GO:0003746|GO:0005525|GO:0006414
Cpe18g00872 481 PRINTS GTP-binding elongation factor signature 90 103 IPR000795 GO:0003924|GO:0005525
Cpe18g00872 481 PRINTS GTP-binding elongation factor signature 130 138 IPR000795 GO:0003924|GO:0005525
Cpe18g00872 481 PRINTS GTP-binding elongation factor signature 150 160 IPR000795 GO:0003924|GO:0005525
Cpe18g00872 481 PRINTS GTP-binding elongation factor signature 166 177 IPR000795 GO:0003924|GO:0005525
Cpe18g00872 481 PRINTS GTP-binding elongation factor signature 203 212 IPR000795 GO:0003924|GO:0005525
Cpe18g00872 481 Pfam Elongation factor Tu GTP binding domain 86 283 IPR000795 GO:0003924|GO:0005525
Cpe18g00872 481 PANTHER ELONGATION FACTOR TU 41 481 - -
Cpe18g00872 481 Pfam Elongation factor Tu domain 2 307 375 IPR004161 GO:0005525
Cpe18g00872 481 Gene3D - 78 285 IPR027417 -
Cpe18g00872 481 Gene3D Translation factors 288 416 - -
Cpe18g00872 481 PANTHER ELONGATION FACTOR TU-RELATED 41 481 - -
Cpe18g00872 481 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 123 138 IPR031157 -
Cpe18g00872 481 Pfam Elongation factor Tu C-terminal domain 380 479 IPR004160 -
Cpe18g00872 481 CDD EF_Tu 87 285 IPR041709 -
Cpe18g00872 481 SUPERFAMILY Translation proteins 287 383 IPR009000 -
Cpe18g00872 481 TIGRFAM small_GTP: small GTP-binding protein domain 89 219 IPR005225 GO:0005525
Cpe18g00872 481 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 380 480 IPR009001 -
Cpe18g00872 481 CDD EFTU_II 293 379 IPR033720 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00872 K02358 tuf, TUFM; elongation factor Tu - csv:101202988 822.772
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01586 Cpe18g00872 CCT
Cpe18g00872 Cpe20g00140 CCT
Cpe09g01124 Cpe18g00872 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01006 Cpe-Chr12:8430408 Cpe18g00872 Cpe-Chr18:7971397 1.32E-175 dispersed
Cpe17g00839 Cpe-Chr17:6514346 Cpe18g00872 Cpe-Chr18:7971397 1.58E-159 dispersed
Cpe18g00872 Cpe-Chr18:7971397 Cpe06g00386 Cpe-Chr6:2186739 5.49E-33 dispersed
Cpe20g00140 Cpe-Chr20:780993 Cpe18g00872 Cpe-Chr18:7971397 2.27E-29 dispersed
Cpe18g00872 Cpe-Chr18:7971397 Cpe04g01586 Cpe-Chr4:12368260 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
Vvi17g834 Blo04g00717 . . . . . Bma06g00224 . . . Cma10g00090 Cma11g00064 Car10g00079 Car11g00058 Sed08g0074 . Cpe04g01586 Bhi02g00598 Tan09g2310 Cmetu02g0003 . . . . Cla06g01704 Cam06g1892 Cec06g1941 Cco06g1945 Clacu06g1848 Cmu06g1789 Cre06g2604 Cone2ag0932 Cone16ag0071 . . . . . . . . . . . Bpe15g00654 Bma03g00766 . . Cmo10g00093 Cmo11g00067 . . . . . Cpe18g00872 . . . . . . . . . . . . . . Lsi06g01592 . . Cme02g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006341 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00872 Cpe_Chr18 FPKM 309.691498 332.869446 841.180115 803.41156 105.68483 127.819099 97.754105 1883.313599 1953.518311 1709.056274