Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00873 ATGGAAGCTCTGGCGCTTCCTTCTATGAATTCTCTCACCATTTCCTGTTCTAATTTGCAGAAAGGGAGTTTCGCCAACTTGCCCGGAACACTGCATCACTGTAAATTTTACGGGCAATCCACCTTGAAGTTCAGGCCCCTTCATGGTACCCGCCACTATCAGTCCAATGTTATCAAAATGCAAAGTGACAGTGAAGACTATGAGCTGAAGCAAATGAGGGACATGGCTGCAGCTAAAAAGAGATGGGACTCTCTGATTCGGGAGGGCAAAGTGAAAGCTCTGACGCCAAGGGAAGCTGGTTATGCCATTCAACTCTCTGATAAGACATTGCTTGATGTGCGTCCTTCTACAGAACACCAAAAGGCATGGGTTAAAGGCTCAACATGGATCCCTATCTTTGAAGTTGATGACAAAGTTGATCCTGGAACTCTTTCTCGAAAGGTCACAAGCTTCATGATGGGGGGTTGGTGGAGTGGTGTGCCTACAGTATCCTACAATAGCCGCTTCTTGTCAGAAGTTCAAGAGCAATTTCCAAAGGATGCTGACCTTATTCTTGCATGTCAAAAGGGATTGAGGTCCCTAGCTGCATGCGAGCTCCTCTACAATGCTGGTTACAAAAACCTCTTCTGGGTTCAAGGGGGTCTAGACGCTGCTGAAGAAGAGGATCTGGCCAGAGAAGGTCCTCAGCCTTTAAAATTTGCTGGGATTGGTGGGGTCTCAGAATTCCTTGGCTGGACCGATCAACAAAGGGTGGCTGGTGCCAAAGAAGGTTGGGGTTATCGCTTGGTTTACTCTGCTCGTCTGATTGCAGTCTTCCTTGCTGCTGATGCCCTGTTTATTGGCGCTCAGCAATTGGGTCGCTATATTCAAGACTTGCGGTCTCACTAA 888 47.64 MEALALPSMNSLTISCSNLQKGSFANLPGTLHHCKFYGQSTLKFRPLHGTRHYQSNVIKMQSDSEDYELKQMRDMAAAKKRWDSLIREGKVKALTPREAGYAIQLSDKTLLDVRPSTEHQKAWVKGSTWIPIFEVDDKVDPGTLSRKVTSFMMGGWWSGVPTVSYNSRFLSEVQEQFPKDADLILACQKGLRSLAACELLYNAGYKNLFWVQGGLDAAEEEDLAREGPQPLKFAGIGGVSEFLGWTDQQRVAGAKEGWGYRLVYSARLIAVFLAADALFIGAQQLGRYIQDLRSH 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7973448 7980961 - Cp4.1LG18g08760.1 Cpe18g00873 485334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00873 295 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 1 294 IPR044664 -
Cpe18g00873 295 Gene3D - 91 259 IPR036873 -
Cpe18g00873 295 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 88 225 IPR036873 -
Cpe18g00873 295 SMART rhod_4 94 224 IPR001763 -
Cpe18g00873 295 CDD RHOD 109 217 - -
Cpe18g00873 295 ProSiteProfiles Rhodanese domain profile. 104 227 IPR001763 -
Cpe18g00873 295 Pfam Rhodanese-like domain 106 217 IPR001763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00873 - - - csv:101221836 533.487
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01365 Cpe18g00873 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g01154 Cpe-Chr10:8372688 Cpe18g00873 Cpe-Chr18:7973448 7.55E-10 dispersed
Cpe14g00024 Cpe-Chr14:141424 Cpe18g00873 Cpe-Chr18:7973448 1.73E-09 dispersed
Cpe18g00873 Cpe-Chr18:7973448 Cpe03g00053 Cpe-Chr3:283565 1.62E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
Vvi17g860 . . Bda06g00622 . . . . Bma12g01059 . . Cma10g00088 . Car10g00078 . . . . Bhi02g00594 . . . . . . Cla06g01706 Cam06g1894 Cec06g1943 Cco06g1947 Clacu06g1850 Cmu06g1791 Cre06g2606 . Cone16ag0063 . . . . . . . . . . . . . . . Cmo10g00089 . . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01599 Csa01g00099 Chy02g02624 Cme02g02022
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g00306 . 59 348 Sulfurtransferasese/Rhodanese AT1G79230 66.4 2.5e-128 455.7
Cpe01g00460 . 59 334 Sulfurtransferasese/Rhodanese AT1G79230 64.4 1.6e-119 426.4
Cpe01g00460 . 59 299 Sulfurtransferasese/Rhodanese AT1G16460 72.6 4.3e-102 368.2
Cpe14g00306 . 59 295 Sulfurtransferasese/Rhodanese AT1G16460 64.9 2.7e-96 349.0
Cpe09g01146 . 103 407 Sulfurtransferasese/Rhodanese AT5G23060 52.1 3.3e-69 259.2
Cpe08g00585 CST 1 365 Sulfurtransferasese/Rhodanese AT4G01050 55.6 3.1e-101 366.3
Cpe01g00960 . 91 450 Sulfurtransferasese/Rhodanese AT2G40760 75.0 1.8e-156 549.7
Cpe04g00046 . 91 437 Sulfurtransferasese/Rhodanese AT1G17850 67.4 3.9e-148 521.9
Cpe10g01154 . 61 180 Sulfurtransferasese/Rhodanese AT2G42220 69.2 1.2e-44 177.2
Cpe03g00053 . 238 418 Sulfurtransferasese/Rhodanese AT3G08920 64.1 1.0e-66 250.4
Cpe18g00873 CCT 1 295 Sulfurtransferasese/Rhodanese AT4G24750 66.3 6.5e-112 401.0
Cpe05g00472 . 67 301 Sulfurtransferasese/Rhodanese AT5G19370 62.3 8.0e-81 297.7
Cpe14g00720 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 71.6 2.0e-147 519.2
Cpe14g00024 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.6 7.3e-79 290.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011200 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00873 Cpe_Chr18 FPKM 8.684437 10.20753 24.284071 21.144972 13.590291 11.802662 11.057937 83.788895 90.142731 78.097679