Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00878 ATGGCTTCTTCTTCAGCCACTTCAATTTTGAAGCCCTTATCCAAGGCAGATTCTTGCCTTCTCTCTTTGCCTTCTCTCTTCACCTGCAGACCCCCGCACTCTTTTCTCTCTTTCCCTTCCAAATTCACCACCGCCCCCTTCCATCTTTCCTCTTCTCATTGTTCTTCGCTCTTTTCCTCCTCGAAGAAGAAGACACATCTCTCATCGCTAGTTGCCTCTGTAGCCCAGTCTTCGGAGTGGGGCCAAGAAGACGATACCATCACCATTGACCCAAAACTCGGCGGCGACGAGGATGGCGAAGAAGGCCCTCATTGGGAAAATCAAGAGCTCAGTGAGAATGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGGCGAAGATGATGGAGGAAGTGAGGGTGAAGGAGGAGGAGTTTTGGAGCTGGGAGACGAGGAAGAAGGCCCTTTGGAGGAGCCAAATGAAGACGCTAAATTGTATGTTGGGAATTTGTCATATGACGTTGATAGTCAAAAGCTTGCAATGCTGTTTGAGAAGGCTGGAACTGTCGAGATTGCTGAGGTTATTTACGACCGACAATCAGATCGGAGTCGTGGTTTCGGTTTTGTGACAATGAGTAGTGTTGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGAGTTCTTGGGGAGGACGTTGGTTGTTAATAAGGCTGCCGCCAGAGGTTCAAGGCCAGAACGCCAACCTCGAACATTTCAACCAGCTTTCAGAATCTATGTTGGTAATCTTGCATGGGAAGTAGACAGTGCACGCCTGGAGCAGGTCTTCAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGATTTGGCTTCGTGACCATGGCCGACGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGGCAGAGCGTAGATGGAAGGGCAATCAGAGTGAATGTCGCAGAGGAAAAACCAAGGCGCAATTTC 1005 49.15 MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSSSKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRISDWEGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7994528 7996143 + Cp4.1LG18g08630.1 Cpe18g00878 485339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00878 335 SUPERFAMILY RNA-binding domain, RBD 245 333 IPR035979 GO:0003676
Cpe18g00878 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 235 IPR000504 GO:0003723
Cpe18g00878 335 SMART rrm1_1 252 325 IPR000504 GO:0003723
Cpe18g00878 335 SMART rrm1_1 158 231 IPR000504 GO:0003723
Cpe18g00878 335 PANTHER RIBONUCLEOPROTEIN 1 334 - -
Cpe18g00878 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 329 IPR000504 GO:0003723
Cpe18g00878 335 Gene3D - 241 335 IPR012677 -
Cpe18g00878 335 MobiDBLite consensus disorder prediction 74 154 - -
Cpe18g00878 335 CDD RRM_HP0827_like 158 233 - -
Cpe18g00878 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 323 IPR000504 GO:0003723
Cpe18g00878 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 228 IPR000504 GO:0003723
Cpe18g00878 335 CDD RRM_HP0827_like 252 328 - -
Cpe18g00878 335 SUPERFAMILY RNA-binding domain, RBD 153 246 IPR035979 GO:0003676
Cpe18g00878 335 MobiDBLite consensus disorder prediction 85 120 - -
Cpe18g00878 335 Gene3D - 92 240 IPR012677 -
Cpe18g00878 335 PANTHER OS02G0815200 PROTEIN 1 334 - -
Cpe18g00878 335 MobiDBLite consensus disorder prediction 121 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00878 - - - mcha:111006981 476.478
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01590 Cpe18g00878 CCT
Cpe04g01590 Cpe18g00878 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00361 Cpe-Chr8:2232891 Cpe18g00878 Cpe-Chr18:7994528 2.47E-42 dispersed
Cpe08g01094 Cpe-Chr8:8297903 Cpe18g00878 Cpe-Chr18:7994528 2.35E-16 dispersed
Cpe14g00970 Cpe-Chr14:8216454 Cpe18g00878 Cpe-Chr18:7994528 1.79E-30 dispersed
Cpe17g00667 Cpe-Chr17:5395516 Cpe18g00878 Cpe-Chr18:7994528 5.59E-16 dispersed
Cpe14g00729 Cpe-Chr14:5165292 Cpe18g00878 Cpe-Chr18:7994528 1.26E-13 transposed
Cpe18g00878 Cpe-Chr18:7994528 Cpe04g01590 Cpe-Chr4:12392068 1.19E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00878 Cpe_Chr18 FPKM 9.281929 10.209326 12.770043 13.162749 15.358605 16.039236 16.573563 15.146778 14.474662 14.619303