Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00880 ATGAAAGTGGGCTCCAGCCATCCAATTGTGATCCCGTTTTTCGTTGGAGACACGCCTATAAAGAAGAAGACCAAGTCTAACTCTACTGCCAATTCTTTTGCTTGCCGGCAAACTCCCTTCGCTCGCAGCCGGAAAATGGCTTTACCTTCCTCCAAACTCCTTCCATTCTTAGTTTTTCTCTCCGTCCTTTTCCATGTCCATGCCCGACTGAACATTGATCCTTCAGATCTCAGAGCCTTTTCTATCATCAAGAATAACTTGGGTATTGACGGTCAACTCTCCCCCTACCCATGCGACAACGCCGGTGTATTCTGCGAGAGACGGCTCTCCAGCAACGGCACTTACGTTTTGAGGGTCACCAGGCTCATTTTCAAGTCCAAAGATCTTGCTGGTTCTCTTCCTCCGGCTATCGGCCGGCTATCGGAGTTGAAAGAGCTTACGATTTCTAATAATCACCTCGTTGACCAAGTGCCTGCCCAAATCGTCGACTGCCGAAAATTGGAAGTTCTCGATCTCCAAAACAACCACTTTTCTGGAAAAGTTCCGTCCGGATTGTCCTCGTTGACTCGCCTTCGGGTCATCGATTTTTCGTCCAATAAGTTCTCGGGGAGTTTGGATTTCTTGAAGTATTTTCCCCATTTGGAAAGTCTCTCCATAGCCAACAATTACTTCACGGGGCGAATCCCAGCTTCAATTCGTTCTTTTCGCAATCTTCGAGTCTTCAACTTCTCTGGAAACCCCCTTCTCGAAAGTTCATACCCCATCGTGAAAGGCGTTGAGTTCTACTCAACTACCGAAGTTCCCAAGCGTTATAAGTTATTAGCTGAGAAGTCCAGTACGAAAGGCAATCACAGTGCCGCCGCCACAGCGCCAACTTCGAGTGCTCAAGCTCCATCTCCTGCGGCCTCACCTCCTCATAGGAACCGGAAGAATAAAGGAAAGATAGTACTTGCTTGGATTCTTGGGTTCCTCGCTGGAGCAATTGCTGGAAGTTTGTCAGGGTTTATCTTTTCACTAATGGTTAAACTCGTCATAGCAGTTATAAAAGGTGGAAGCAAGAATTCGGGACCCTCAATATTTGCACCTAAGCTGATAAAACGAGAGGATCTGGCTTTTCTAGAGAAAGACGATGCACTAGCATCGCTCGAACTGATTGGAAAAGGTGGATGTGGAGAAGTTTACAAGGCGGAATTACCAGAAAAAAGCGGAAAAATGTTTGCGATTAAGAAGATAACTCAGCCCCCAAAGGACGCGGCCGAGTTAGCTGACGAGGATAGCAGGTTTATGAGCAAGAAAATGCGTCAGATCAAGTCAGAGATCAGAACTGTGGGTGAAATCCGGCATCGGAATCTTCTTCCTCTTGTGGCCCATGTCCCCCGTCCTGATTGCCATTACCTTGTGTACGAGTTGATGAAGAATGGCAGCTTGCAAGATATATTGAATCAGGTTTCGGGAGGAGTGAAAGAACTAGATTGGCTTACTCGGCATAACATCGCTCTCGGAGTGGCATCTGGGCTGGAGTATCTTCACATGAACCATACCCCGCGTATTATTCACAGGGATCTGAAGCCTGCAAATGTTTTGCTTGATGACGACATGGAAGCTCGAATTGCTGATTTTGGGCTGGCAAAAGCAATGCCAGATGCCCAAACTCACATGACAGCTTCAAATGTTGCAGGTACCGTAGGATACATCGCACCAGAGTATCATCAGACCTTGAAGTTCACTGATAAGTGCGATATATACGGCTTTGGGGTTCTGCTTGGTGTCTTGGTGATCGGGAAACTTCCATCTGATGAGTTTTTCCAGGACACGGATGAGATGAGTTTGGTTAAGTGGATGAAGAATGTGATGACTTCGGATAATCCTAGGAGAGCCATTGATCCGAAGCTCCTGGGAAATGGCTGGGAGGAGCAAATGCTCTTGGCCCTCAAAATTGCCTGCTTTTGCACTATGGATAATCCAAAAGAGAGGCCTAACAGTAAGGATGTCAGATGCATGCTGTCACAGATCAAGCACGACGTACCTGAAACTTCCTCTCTAAACGTCTAA 2052 46.88 MKVGSSHPIVIPFFVGDTPIKKKTKSNSTANSFACRQTPFARSRKMALPSSKLLPFLVFLSVLFHVHARLNIDPSDLRAFSIIKNNLGIDGQLSPYPCDNAGVFCERRLSSNGTYVLRVTRLIFKSKDLAGSLPPAIGRLSELKELTISNNHLVDQVPAQIVDCRKLEVLDLQNNHFSGKVPSGLSSLTRLRVIDFSSNKFSGSLDFLKYFPHLESLSIANNYFTGRIPASIRSFRNLRVFNFSGNPLLESSYPIVKGVEFYSTTEVPKRYKLLAEKSSTKGNHSAAATAPTSSAQAPSPAASPPHRNRKNKGKIVLAWILGFLAGAIAGSLSGFIFSLMVKLVIAVIKGGSKNSGPSIFAPKLIKREDLAFLEKDDALASLELIGKGGCGEVYKAELPEKSGKMFAIKKITQPPKDAAELADEDSRFMSKKMRQIKSEIRTVGEIRHRNLLPLVAHVPRPDCHYLVYELMKNGSLQDILNQVSGGVKELDWLTRHNIALGVASGLEYLHMNHTPRIIHRDLKPANVLLDDDMEARIADFGLAKAMPDAQTHMTASNVAGTVGYIAPEYHQTLKFTDKCDIYGFGVLLGVLVIGKLPSDEFFQDTDEMSLVKWMKNVMTSDNPRRAIDPKLLGNGWEEQMLLALKIACFCTMDNPKERPNSKDVRCMLSQIKHDVPETSSLNV 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8002077 8004128 + Cp4.1LG18g08820.1 Cpe18g00880 485341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00880 683 SMART serkin_6 379 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00880 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Cpe18g00880 683 Gene3D Ribonuclease Inhibitor 78 186 IPR032675 -
Cpe18g00880 683 Gene3D Ribonuclease Inhibitor 187 257 IPR032675 -
Cpe18g00880 683 Pfam Protein kinase domain 382 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00880 683 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Cpe18g00880 683 SUPERFAMILY Protein kinase-like (PK-like) 379 672 IPR011009 -
Cpe18g00880 683 SUPERFAMILY L domain-like 92 251 - -
Cpe18g00880 683 MobiDBLite consensus disorder prediction 278 309 - -
Cpe18g00880 683 MobiDBLite consensus disorder prediction 278 301 - -
Cpe18g00880 683 Gene3D Transferase(Phosphotransferase) domain 1 471 681 - -
Cpe18g00880 683 ProSiteProfiles Protein kinase domain profile. 379 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00880 683 Gene3D Phosphorylase Kinase; domain 1 371 470 - -
Cpe18g00880 683 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN-RELATED 53 673 - -
Cpe18g00880 683 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 53 673 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01593 Cpe18g00880 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01186 Cpe-Chr12:9729730 Cpe18g00880 Cpe-Chr18:8002077 3.04E-46 dispersed
Cpe18g00880 Cpe-Chr18:8002077 Cpe05g00090 Cpe-Chr5:430776 2.49E-08 dispersed
Cpe18g00880 Cpe-Chr18:8002077 Cpe04g01593 Cpe-Chr4:12403043 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63009 PF00069 Pkinase 6.20E-42 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00880 - - csv:101220500 1073.92