Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00881 ATGGGTGGGGTTACTTCGTCCATGGCTGCTAAACTCGCCTTCTTCCCTCCTAATCCGCCCTCTTACAAGCTCGTCAAAGACCAACCCACTGGCCTTCTTCTCTTGGACCCTTTTCCCCACCGTGAAAATGTCGATGTCTGGAAGCTCCCCACCCGCAAAGGCAACGAGATCGTCGCGGTTTACATCCGATACCCTATGGCTACTTCTACGCTTCTTTATTCACATGGTAATGCTGCTGATGTTGGTCAGATGTACGAGCTCTTCGTTGAGCTTAGTATCCATTTGCGCGTTAATCTTCTTGGATACGATTATTCTGGATACGGGCAATCCACGGGGAAGCCAAGTGAGCACAATACTTATGCAGATATTGAGGCTGCGTACAAGTGTCTTGAGGAGAAGTATGGTGCTAAGCAAGAGGACATAATCCTTTATGGTCAATCTGTTGGAAGTGGCCCAACTTTGGACCTTGCTGCACGTTTGCCCCGACTGCGAGCGGTTGTCCTGCACAGTCCTATATTGTCAGGATTGAGAGTCATGTATCCAGTGAAGCGCACGTATTGGTTCGACATCTATAAGAACATTGATAAAATACCTTATGTAAAGTGCCCTGTGCTGGTAATTCATGGAACTTCCGATGATGTCGTTGATTTCTCTCACGGAAAACAGCTCTGGGAGCTGTGTCAAGAGAAATATGAACCCTTGTGGCTCAAAGGGGGAAACCACTGTGATCTTGAACTCTTCCCTGAATACATTAGGCATCTCAAGAAGTTTGTATCCACAGTCGAGAGATCACCTTCACAAAGGAAAAGTTCAAGGAAAAGCACAGACCGAATGGAGGCCCCAAGACGGAGCACGGATTGTTTCGAGGTCTCGAGAAGGAGCACAGACAGGCGAGAGAAGCCGAGGAAAAGCGTGGAGAGACTAGATAAATCAAGACCTCAAGGATTCAAGTTTGCCAACATTGAGAAGCTAGAGAAACTAAGAATCTCACTTGACCAAGTAGAGAGATCAAGGAGAAGTGTGGAATACTATGAGAAACCGAGGAGAAGCATCGACCAACAGTTTGAAAAAGCTCGAAAGAGCGTCGATTGGTTGGATAGAATCCGTGCCGGGTAG 1116 47.22 MGGVTSSMAAKLAFFPPNPPSYKLVKDQPTGLLLLDPFPHRENVDVWKLPTRKGNEIVAVYIRYPMATSTLLYSHGNAADVGQMYELFVELSIHLRVNLLGYDYSGYGQSTGKPSEHNTYADIEAAYKCLEEKYGAKQEDIILYGQSVGSGPTLDLAARLPRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPYVKCPVLVIHGTSDDVVDFSHGKQLWELCQEKYEPLWLKGGNHCDLELFPEYIRHLKKFVSTVERSPSQRKSSRKSTDRMEAPRRSTDCFEVSRRSTDRREKPRKSVERLDKSRPQGFKFANIEKLEKLRISLDQVERSRRSVEYYEKPRRSIDQQFEKARKSVDWLDRIRAG 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8010732 8014454 + Cp4.1LG18g08830.1 Cpe18g00881 485342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00881 371 Pfam Serine aminopeptidase, S33 70 174 IPR022742 -
Cpe18g00881 371 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 1 315 - -
Cpe18g00881 371 Gene3D alpha/beta hydrolase 46 260 IPR029058 -
Cpe18g00881 371 Coils Coil 120 140 - -
Cpe18g00881 371 MobiDBLite consensus disorder prediction 262 309 - -
Cpe18g00881 371 PANTHER ALPHA/BETA-HYDROLASE SUPERFAMILY PROTEIN 1 315 - -
Cpe18g00881 371 MobiDBLite consensus disorder prediction 266 309 - -
Cpe18g00881 371 SUPERFAMILY alpha/beta-Hydrolases 9 260 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00881 K01076 ABHD17; abhydrolase domain-containing protein 17 [EC:3.1.2.22] - csv:101220027 713.761
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02445 Cpe-Chr1:20287734 Cpe18g00881 Cpe-Chr18:8010732 1.09E-177 dispersed
Cpe02g01413 Cpe-Chr2:12301435 Cpe18g00881 Cpe-Chr18:8010732 2.44E-116 dispersed
Cpe04g01036 Cpe-Chr4:9163405 Cpe18g00881 Cpe-Chr18:8010732 1.09E-12 dispersed
Cpe13g00994 Cpe-Chr13:8213304 Cpe18g00881 Cpe-Chr18:8010732 3.39E-168 dispersed
Cpe01g02316 Cpe-Chr1:19506421 Cpe18g00881 Cpe-Chr18:8010732 2.67E-153 wgd
Cpe18g00881 Cpe-Chr18:8010732 Cpe03g00602 Cpe-Chr3:3616978 5.65E-07 wgd
Cpe18g00881 Cpe-Chr18:8010732 Cpe04g01594 Cpe-Chr4:12408763 0 wgd
Cpe18g00881 Cpe-Chr18:8010732 Cpe04g00513 Cpe-Chr4:5653505 3.59E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g872 . . . . Bpe12g00679 . . Bma12g01282 . . Cma10g00080 Cma11g00058 Car10g00071 Car11g00052 Sed08g0062 . . Bhi02g00575 Tan09g2328 Cmetu02g1969 . Hepe09g0082 . . . . . . . . . . Cone16ag0060 . . . . . . Blo13g00157 . . . Bpe07g01087 . . . . Cmo10g00080 Cmo11g00060 . . . . . Cpe18g00881 . . . . . . . . . . . . . . . Csa01g00088 Chy02g02632 Cme02g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000437 3 6 3 3 4 4 5 4 4 4 3 4 5 4 4 4 4 6 3 4 4 4 4 4 4 2 4 6 4 4 121
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00881 Cpe_Chr18 FPKM 28.003366 31.391096 29.282162 29.646751 18.902149 18.478207 19.524012 29.866144 26.46586 27.378304