Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00900 ATGGCCGCCACCAACACCAATGTCGCCACCGCCGTCGACGACCGCGTCTTGGCCACTGCGCAGCAGATCGTCAAGAGCCTCAATACCCCTAAAGAGGTTCGTGAGGACATGCTCTTGATTCTCTCCAATTTCGATAATCGCCTTTCCAGTATCGGTAGTATGATCAACAGTGACAACAACTCCAACACCGAGAACGATAGGTTGGATGCTGCTGAGAAGGTGATTCTACGTTGGGATCCTAATTCAGATGTACCGAGACCGTCGCTTAATTGGGAGGACTCGCCGGACGAGGCGGCTGAATATTTATCTGCGGTGGATGATATACTCCGGCTAGTTGAAGGCCTGTCAATTGGGTCCGAGTCGACCAAGATCGTTGCCCGGGCGGAAAACGCGATCCAAATGGCGATGTGTCGGCTCGAGAGCGAATTTCGCCATATCCTGATCCAGAGCACAGTTCCTCTCGACGCCGATCGGCTCTACGGCTCGATCCGAAGAGTTCACCTCTCATTTGCGTCCCATTACAGTGAAATTGACGACGAATTCGAGAGTTTCGGCGAGGAAAGTCGCAATTCCGGGCGATTCCATGAGCGAGGTGCGACAATTGGAGAAGATTCTTGGGTCGATTTGATCCATCCCGATGCGGCTGTTGATCTCTCGGAAATTGCGGACCGTATGATTCGCTCTGGCTACGAAAAGGAGTGTGTTCAAGTCTACAGCACCGTTCGTCGCGATGCTTTGGACGAGTGTTTGGCAATTCTTGGCGTCGAACGGCTCAGCATTGAGGAGGTTCAGAAAAGTGACTGGAAATTTCTAGACGAGAAGATGAAGAAATGGATCCAGGCCGTCAAAATTACTGTCCGGTTGATTTTGGTCGGTGAGAAGAGGCTCTGTGACCAGATTTTTAGTGGCGCCAATGAATCCCAGGAGATTTGTTTTAACGAAACAGCAAAAGGGTGTGTAATGCAGCTGCTAAATTTCGGTGAGGCAGTGGCTATTGGGAAGAGGTCACCGGAGAAGCTGTTCCGAATCTTGGATATGTATGACGCTCTGGCTGGCGTTTTGCCACACTTGGAAGCCATGGTTTCCGATGAGTTTCTGATCGGTGAAGTACACGGAGTATTGTCTGGACTGGGAGAAGCAGCCACGGGAACTTTTGTGGAGTTTGAGAACGCTATTCTTAGCGAAAATTCAAAGAAAGCAATGCAAAATGCCGATATTCACCCGCTCATTCGATATGTAATGAATTATGTTAGGCTGCTGGTTGATTACAGTAAGACAATGAACTCTCTTTTAGAAGATGAGGAAGAACAAGACATGCCAAATGAGAAGGATAACGATGATATACTGCAGTTGGAAAGCACGTCGCCTTTGGCTCGTCGATTGTTCATGTTGTTATCGTCTCTGGAGTCCAATCTTGTGGAGAAATCTAAATTTTATGAGGATGTTTCTATGCAGTTCATATTCCTAATGAACAATATACTGTACATAGTGAAAAAGGTGAAAGATTCTGAGCTTGCCCAGCTGCTTGGCGATAACTGGCTTCGCAGGCGTAGCGGCCAAATTCGCCAATATGAAACTAGTTACCTTAGAGCCTCTTGGAGCAAAGTCTTGTCTTGCTTAAAGGATGAAGGCATTGGTGGGAGCCCAAGCAACGCCTCCAAGGTAGCTTTGAAGGAGAAGTTCAAGAATTTCAATGCAGGTTTTGAGGAAATCTGCAGGGTTCAAACAGCTTGGAAGGTGTCGGATACTCAACTGCGCGATGAGCTGATCATATCGGTTTCGGAGAAGGTGATTCCTGCGTACCGCTCCTTCTTAGGAAGGTTTAGAAATCAGTTAGAGAGCGGAAGGCATTCTGGGAAGTACATAAAGTACACGCCAGAGGATTTAGAGAACTATCTGTCAGATTTGTTTGAAGGATCACTTGCTGTATCACATCACTTGCGAAGAAAGAGTACTTGA 1959 47.58 MAATNTNVATAVDDRVLATAQQIVKSLNTPKEVREDMLLILSNFDNRLSSIGSMINSDNNSNTENDRLDAAEKVILRWDPNSDVPRPSLNWEDSPDEAAEYLSAVDDILRLVEGLSIGSESTKIVARAENAIQMAMCRLESEFRHILIQSTVPLDADRLYGSIRRVHLSFASHYSEIDDEFESFGEESRNSGRFHERGATIGEDSWVDLIHPDAAVDLSEIADRMIRSGYEKECVQVYSTVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRLILVGEKRLCDQIFSGANESQEICFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLPHLEAMVSDEFLIGEVHGVLSGLGEAATGTFVEFENAILSENSKKAMQNADIHPLIRYVMNYVRLLVDYSKTMNSLLEDEEEQDMPNEKDNDDILQLESTSPLARRLFMLLSSLESNLVEKSKFYEDVSMQFIFLMNNILYIVKKVKDSELAQLLGDNWLRRRSGQIRQYETSYLRASWSKVLSCLKDEGIGGSPSNASKVALKEKFKNFNAGFEEICRVQTAWKVSDTQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRHSGKYIKYTPEDLENYLSDLFEGSLAVSHHLRRKST 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8087530 8089488 - Cp4.1LG18g09000.1 Cpe18g00900 485361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00900 652 Pfam Exo70 exocyst complex subunit 276 635 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cpe18g00900 652 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 49 651 - -
Cpe18g00900 652 SUPERFAMILY Cullin repeat-like 69 638 IPR016159 -
Cpe18g00900 652 Gene3D Exocyst complex component Exo70 87 645 - -
Cpe18g00900 652 PANTHER EXOCYST COMPLEX PROTEIN EXO70 49 651 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00900 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101205970 1119.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00582 Cpe-Chr16:6587972 Cpe18g00900 Cpe-Chr18:8087530 5.87E-92 dispersed
Cpe18g00900 Cpe-Chr18:8087530 Cpe20g00075 Cpe-Chr20:397470 2.18E-125 dispersed
Cpe02g01373 Cpe-Chr2:12084757 Cpe18g00900 Cpe-Chr18:8087530 2.33E-144 transposed
Cpe18g00900 Cpe-Chr18:8087530 Cpe20g00308 Cpe-Chr20:1732404 0 wgd
Cpe18g00900 Cpe-Chr18:8087530 Cpe04g01614 Cpe-Chr4:12537686 0 wgd
Cpe18g00900 Cpe-Chr18:8087530 Cpe09g00962 Cpe-Chr9:8594080 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01290 CCT 10 651 EXO70 exocyst subunit family AT5G03540 74.9 1.7e-277 952.2
Cpe09g00367 CCT 10 641 EXO70 exocyst subunit family AT5G03540 74.9 5.0e-277 950.7
Cpe10g00315 CCT 1 639 EXO70 exocyst subunit family AT5G03540 67.1 4.9e-248 854.4
Cpe19g00500 CCT 1 620 EXO70 exocyst subunit family AT5G03540 65.8 2.2e-240 828.9
Cpe10g00315 CCT 1 639 EXO70 exocyst subunit family AT5G52340 74.7 2.1e-277 951.8
Cpe01g01290 CCT 12 651 EXO70 exocyst subunit family AT5G52340 73.6 1.6e-269 925.6
Cpe19g00500 CCT 1 620 EXO70 exocyst subunit family AT5G52340 72.8 2.1e-269 925.2
Cpe09g00367 CCT 12 641 EXO70 exocyst subunit family AT5G52340 72.1 2.2e-261 898.7
Cpe01g01290 CCT 147 651 EXO70 exocyst subunit family AT5G52350 58.7 4.1e-166 582.0
Cpe10g00315 CCT 145 632 EXO70 exocyst subunit family AT5G52350 60.3 5.1e-164 575.1
Cpe09g00367 CCT 147 641 EXO70 exocyst subunit family AT5G52350 57.3 9.2e-158 554.3
Cpe19g00500 CCT 145 613 EXO70 exocyst subunit family AT5G52350 58.0 8.7e-156 547.7
Cpe20g00898 CCT 1 625 EXO70 exocyst subunit family AT5G58430 65.7 4.9e-242 834.3
Cpe02g01140 CCT 1 624 EXO70 exocyst subunit family AT5G58430 65.6 5.5e-241 830.9
Cpe20g00898 CCT 1 624 EXO70 exocyst subunit family AT1G07000 52.0 6.5e-175 611.3
Cpe02g01140 CCT 1 623 EXO70 exocyst subunit family AT1G07000 50.9 5.2e-172 601.7
Cpe08g00067 . 58 671 EXO70 exocyst subunit family AT5G13150 51.5 1.9e-167 586.6
Cpe03g01216 . 62 676 EXO70 exocyst subunit family AT5G13150 50.2 2.7e-166 582.8
Cpe13g00544 . 66 602 EXO70 exocyst subunit family AT5G13150 51.1 1.5e-153 540.4
Cpe01g01977 . 81 677 EXO70 exocyst subunit family AT5G13990 54.5 1.6e-185 646.7
Cpe13g00544 . 64 603 EXO70 exocyst subunit family AT5G13990 56.4 3.4e-175 612.5
Cpe03g01013 . 12 611 EXO70 exocyst subunit family AT1G72470 64.1 9.8e-214 740.3
Cpe02g01761 CCT,ECH 12 599 EXO70 exocyst subunit family AT1G72470 61.7 4.0e-199 691.8
Cpe03g01013 . 12 609 EXO70 exocyst subunit family AT1G54090 62.3 1.2e-208 723.4
Cpe02g01761 CCT,ECH 9 594 EXO70 exocyst subunit family AT1G54090 59.8 1.1e-193 673.7
Cpe03g01013 . 9 610 EXO70 exocyst subunit family AT3G14090 63.4 1.4e-217 753.1
Cpe02g01761 CCT,ECH 9 594 EXO70 exocyst subunit family AT3G14090 61.3 1.1e-201 700.3
Cpe04g01614 CCT,CST 14 648 EXO70 exocyst subunit family AT5G50380 62.8 9.9e-228 786.9
Cpe18g00900 . 13 651 EXO70 exocyst subunit family AT5G50380 62.2 2.9e-227 785.4
Cpe09g00962 CCT 15 654 EXO70 exocyst subunit family AT5G50380 62.6 1.1e-226 783.5
Cpe20g00308 CCT,CST 17 624 EXO70 exocyst subunit family AT5G50380 61.6 3.4e-212 735.3
Cpe11g00545 . 15 684 EXO70 exocyst subunit family AT4G31540 73.3 5.7e-292 1000.3
Cpe07g00257 . 55 722 EXO70 exocyst subunit family AT4G31540 73.1 1.7e-291 998.8
Cpe01g00211 . 35 591 EXO70 exocyst subunit family AT3G55150 50.3 2.3e-146 516.5
Cpe01g01118 . 9 591 EXO70 exocyst subunit family AT2G39380 50.7 5.9e-150 528.5
Cpe03g00140 . 26 630 EXO70 exocyst subunit family AT3G09520 55.5 1.1e-180 630.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00900 Cpe_Chr18 FPKM 13.463174 12.567494 7.351805 8.053192 5.890973 6.062805 5.735168 13.645552 11.978559 14.575528