Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00908 ATGGAGAGCAACAACCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCCTTACACCACCTCCTTCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGTCAAGAAATCGAACAGGTTAATGACTTTAAAAACCATCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTGCGTATGATATCCGCTGAGGCACCCATTTTGTTCGCCAAGGCGTGCGAGCTCTTCATTCTTGAACTCACGATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGTACATTGCAGAAGAATGATATTGCAGCGGCCATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGTGGCATGGTTGGAGCCACTGCCAGTGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGCCCCCTGGGGGGATGATGATTGGGAGACCAGCAATGGATCCCACCGGAGTCTACGCTCAGCCGCCGTCGCAGGCGTGGCAATCGGTGTGGCAGCCGGCCGCAGAGGATGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGCAATCTTGATGGTCAGAGTCTCCAAGGTGTGGACTGTGACCTAATCACTAATTACAACACTATTCTAATCACTAATGAGTTAAGCAATTCTTGTGTAGATGATCTGCCGTGTGGTGCCAATGAAAAAATGATGCGTCTTGCTGATGCTATCCAGGGCGTAAAACTAAGTGTATTTTTCTTTTATGTTTCCTTCTTTTCGAACGTGGTTACCCTTAGAAACTTGTAA 867 51.33 MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQSLQGVDCDLITNYNTILITNELSNSCVDDLPCGANEKMMRLADAIQGVKLSVFFFYVSFFSNVVTLRNL 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8122394 8125520 - Cp4.1LG18g09160.1 Cpe18g00908 485369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00908 288 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 4 220 - -
Cpe18g00908 288 MobiDBLite consensus disorder prediction 1 23 - -
Cpe18g00908 288 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982
Cpe18g00908 288 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 220 - -
Cpe18g00908 288 SUPERFAMILY Histone-fold 29 128 IPR009072 GO:0046982
Cpe18g00908 288 Pfam Core histone H2A/H2B/H3/H4 47 119 IPR007125 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00366 Cpe-Chr11:2009655 Cpe18g00908 Cpe-Chr18:8122394 2.45E-10 dispersed
Cpe18g00070 Cpe-Chr18:1728604 Cpe18g00908 Cpe-Chr18:8122394 2.06E-67 dispersed
Cpe18g00908 Cpe-Chr18:8122394 Cpe04g00147 Cpe-Chr4:1422317 1.00E-63 dispersed
Cpe14g00500 Cpe-Chr14:3170573 Cpe18g00908 Cpe-Chr18:8122394 3.50E-31 transposed
Cpe18g00908 Cpe-Chr18:8122394 Cpe04g01618 Cpe-Chr4:12557973 8.57E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50936 PF00808 CBFD_NFYB_HMF 3.60E-17 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00908 - - cmax:111500215 331.257