Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00918 ATGGACACCTCACAGCGGGAACCGAGTGATAGACGAGTTCCAGACGAACCAGAGCTCGATCTGTACACCATTCCAAGTCACTCCAGTTGGTTTTCGTGGGATGAAATTCACGAAACTGAGAAGTCTGCTTTGAAGGAGTTCTTTGATGGAAGCTCAATATCAAGAACACCGCGCATATACAAAGAGTATAGAGATTTTATTATCAATAAGTACAGGGAAGAGCCTTCAAGCAGGCTTACATTCACCGAAATTCGTAAGTCACTCGTGGGGGATGTTAATTTGCTTCATAAGGTGTTTATTTTCTTGGAGACATGGGGGTTGATCAACTTTGCCGCAACTTCGGATGGTAACGATTCCGAGGATGTGGTAGATGGAGACAGCCCTACAATTAAGATTGAAGAGGGGGTTCCCAATGGGATTCGTGTGGGAGCAATGCCGAATTCGGTCAAGCCAATTTCAGCGCCACCTGTTGTGGAAGACAGTTCTATCGTTAATGGGAGCGGGTTTAAATCGCCCCCTCTGACTTCTTATTCAGATGTTTTCACTGACTTGTTGAAGCTGAAGATTTTAGTGTGTGGGAATTGTGGTCAGTCTTGTGGATCTCGATACCATCAATGCGCCAAGGATGGTTATTTAATTTGCGAAAATTGTTTCAATGATAAAAATTACGGGGAGCAGAGGCTTTTGGAAGATTTTGAGTTGAAGACCAAGGAGTTCATTGAAGATAGCGTTAATACCGGAGCTGTGTGGACTGAGGCAGAAACTCTGCTTCTTTTGGAATCCTTTTTGAAGCATGGAGATGACTGGGAACTCGTTGCTCAAAATGTTAAAACTAAGACTAAATTGGATTGTATATTGAAGCTCGTGGAGTTGCCTTTTGGGGACTTCGTGTTACGTTCTGAAGCTCAAAGGAACGAGGCTAGAGGTCCCAATAACAACGTCACCAGTGAAAAAGAAATTAGACTCTCTCCATCTAACAATCAGGAGGTTGCCGGAAGTGAAGACCAGGACATAAATGAGGACAAAGATGAAGAGAATCAAGGTCCTCCCAAGCGACAGTGCACTGCTTCTGTTCCAGATACGAGCAGTTCTCTGATGAAACAGGTAGCTTTGATATCAAGCATGGTTGGGCCACATATTATGGCGGCTGCTGCTACTGCTTCTGTTGCTGCACTTTGTGACGAAAACTTATATCCGAAAGAAGTCTTTGATGATCAAGATTTTTTTGTACCTAATGGATTGTGTTCTGCGGCTTCCACCGAATCAAATCATGAGGTTGAGAGAATTCTCGATAACGATGATTCAGTGCCGAAGGAGGAGAGGCCTCAATCAGGTGATATAATGGTAGAGGACAAAGATGACATTCCTTTGATCTTGCGAATTAGAGCTGCAACAGCAACAGCACTTGGCGCTGCTGCCGCACATGCAAAATTACTTGCTGATCAAGAAGAGAGAGAAATTGAATATTTGTTGGCGATAATGATAGAAACACAGATGAAGAAGATGCAACGCAAAATTAAGCATTTTGAAGATCTGGAGGAAATAATGGAAGCAGAATACCCTGTGATTGAGGAGCTAGAAGATAAACTGTTGATGGAACGGGTTAGTGTGTTGCAATCTGCATTTGATCTTGGTATCTCTAGGTGGAAGGATTACCCTTCTTCGGGTTCGGTTGAGGTAAAGTTGAGCGTGAATTTGAGCGTGAATATGAGAACTACGACCACGATGCCCAGAAGGCGCCTTCGACTGAGCTGTTCTTCCGATGAAGACCACGAAAACGAAGACTTCGAACATGATCCTCACTGCCCAGATTCCTCCGCCACCTCTCTTCAGCCTCCCATTATCGACAATCTTAACTCTCATTTTAATCCCAACGTTTCTGAGCCCGTCCAACTTTCCGACGACGACGACGAACAAGATTTTATCGATGTCTCCGAACATCTCTCGCCTCCCTCTCCGGACTCTGATCATTCTCTCCGTCACTCGCCTGAGCCGAATCCTCATGTCGCTTCCCGCGAGCCGTCGTGTCCTGTGAGCGAGTTCCTTCGGGGACTTGGTTTAAGCTTGAACAGAGAGTGGCTGGATGCCTGTATCCGTGCCCATCATGGGTCTGTACCGGGTTTTTTGAGCCTCAACCCAGCAGAGAAAGGAAAGCTGTGTTTTGAGCAGTTTTTGGTTTCTGATATGAATTACGCGGGTGCTGGTGTCCTGCCCGAAAATGTTGATTCTATGCATCTCGTTGATCTCCCTGGTCCATACGTACTGCAGGTCGATGAGATAGTTAACATCAGTTGTCCTCTAAAGGGTAGATATCAGACTTCCCCTGCGAGTATTAAGAGGTGCCTTAAGCTGTCTATGACGGATGGTGTTCAGCGAGTTTTTGGCATGGAATACAGGCCTATTAAGGGTCTTGAAGTTTTAGCACCTGCTGGGTTGAAGGTAGTGATCTGCAATGTAACTGTACGGCGTGGGGTTCTAATGCTAGTTCCTGAAGCTTTTGAGGTTCTAGGAGGTCTGGTTGAAGAACTGGAGTCAGCTCGGCAGCGTCTGGTTGATGAAGTGAACAAGCCACCTAGAGGAAGGAGAACGAGGACAGGCGTGGTTCCTCCCTTGGCAACTAGAGCCACACATGCCGCATGGCCATCGGACACTGTTCCAGAGCCCGTGCCCTCTAGCAGAATAGTGGATGCTGAACCTTCTCGTTCAGACCAAGGTGTTCACATGTTCCATAGGGGAAATGAAGCAGTCACTGCTCCAGTTAGTGATGCATTTACAACCCCAGTCAGCAGAACAAATGCGAATTCTGAGCTATCTACTAATTTTGTTTCAAATGTTGAGGAGGTTCATTTACATTCCGTTCCCAGTAGTAGAGCTAGAACTGTGTCTACTATTATGTCCAATTCAATAGAGGATACCAATACGGTCAATTCGATAGAAGGCACCAATATGGTCAATTCCGTAGAGGACACCGATATGGTTGATATTGAGCATCCACTCATTTTATCTGGTGATAGGGAAATGCCTTTCACTTACTTGGCTAGTTTGTCGGCTAAGTGGGCATCAGGGAAGGAAAAATCTCCATCAGTTCGTGGAAAAATCAAGTGCTTTTTGACTGGTGTAAAAGGATTTCAATTCAGGCAAAGGACAACATACGATCTACATGCTTATGTTGATGACGGCAGCCTCATTTCTGAGGTCCTCATTGATCACGAGGCTGTACAGCAAGCGATTGGCCATTCTCCCAAGGATGTTACAGATGCTCTTGGTTCTTCTGATGTCAAAGTAGTGAGTGGCATGAAGGAGGCTTTGAGACAGTTCCAAATTTTCTTGGTAAATTTTGAGGGTACAATGCTGGTTGAGATGAATAGAACGTCTTCTCTGCCAGTTGTTCTTGAGATGGAGGAGGGTTGTCTGGAATCTGATGCTTGGTTGCTTTTGAGAAGACTCGAATGTTCGAATGCTGTTCAAACCAATGAGCATGCCCGTATAGACCCTATAGATGTGTCCCCTTAA 3513 45.35 MDTSQREPSDRRVPDEPELDLYTIPSHSSWFSWDEIHETEKSALKEFFDGSSISRTPRIYKEYRDFIINKYREEPSSRLTFTEIRKSLVGDVNLLHKVFIFLETWGLINFAATSDGNDSEDVVDGDSPTIKIEEGVPNGIRVGAMPNSVKPISAPPVVEDSSIVNGSGFKSPPLTSYSDVFTDLLKLKILVCGNCGQSCGSRYHQCAKDGYLICENCFNDKNYGEQRLLEDFELKTKEFIEDSVNTGAVWTEAETLLLLESFLKHGDDWELVAQNVKTKTKLDCILKLVELPFGDFVLRSEAQRNEARGPNNNVTSEKEIRLSPSNNQEVAGSEDQDINEDKDEENQGPPKRQCTASVPDTSSSLMKQVALISSMVGPHIMAAAATASVAALCDENLYPKEVFDDQDFFVPNGLCSAASTESNHEVERILDNDDSVPKEERPQSGDIMVEDKDDIPLILRIRAATATALGAAAAHAKLLADQEEREIEYLLAIMIETQMKKMQRKIKHFEDLEEIMEAEYPVIEELEDKLLMERVSVLQSAFDLGISRWKDYPSSGSVEVKLSVNLSVNMRTTTTMPRRRLRLSCSSDEDHENEDFEHDPHCPDSSATSLQPPIIDNLNSHFNPNVSEPVQLSDDDDEQDFIDVSEHLSPPSPDSDHSLRHSPEPNPHVASREPSCPVSEFLRGLGLSLNREWLDACIRAHHGSVPGFLSLNPAEKGKLCFEQFLVSDMNYAGAGVLPENVDSMHLVDLPGPYVLQVDEIVNISCPLKGRYQTSPASIKRCLKLSMTDGVQRVFGMEYRPIKGLEVLAPAGLKVVICNVTVRRGVLMLVPEAFEVLGGLVEELESARQRLVDEVNKPPRGRRTRTGVVPPLATRATHAAWPSDTVPEPVPSSRIVDAEPSRSDQGVHMFHRGNEAVTAPVSDAFTTPVSRTNANSELSTNFVSNVEEVHLHSVPSSRARTVSTIMSNSIEDTNTVNSIEGTNMVNSVEDTDMVDIEHPLILSGDREMPFTYLASLSAKWASGKEKSPSVRGKIKCFLTGVKGFQFRQRTTYDLHAYVDDGSLISEVLIDHEAVQQAIGHSPKDVTDALGSSDVKVVSGMKEALRQFQIFLVNFEGTMLVEMNRTSSLPVVLEMEEGCLESDAWLLLRRLECSNAVQTNEHARIDPIDVSP 1170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8162127 8169915 - Cp4.1LG18g09190.1 Cpe18g00918 485379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00918 1170 Pfam SWIRM domain 25 110 IPR007526 GO:0005515
Cpe18g00918 1170 Pfam Recq-mediated genome instability protein 1, C-terminal OB-fold 1007 1149 IPR032199 GO:0000166
Cpe18g00918 1170 SUPERFAMILY Homeodomain-like 20 113 IPR009057 -
Cpe18g00918 1170 Pfam SWIRM-associated region 1 467 540 IPR032451 -
Cpe18g00918 1170 Pfam RecQ mediated genome instability protein 686 848 IPR013894 -
Cpe18g00918 1170 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 932 1153 - -
Cpe18g00918 1170 MobiDBLite consensus disorder prediction 586 602 - -
Cpe18g00918 1170 MobiDBLite consensus disorder prediction 879 901 - -
Cpe18g00918 1170 SUPERFAMILY Homeodomain-like 245 295 IPR009057 -
Cpe18g00918 1170 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 932 1153 - -
Cpe18g00918 1170 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 675 927 - -
Cpe18g00918 1170 Gene3D - 28 114 IPR036388 -
Cpe18g00918 1170 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 675 927 - -
Cpe18g00918 1170 MobiDBLite consensus disorder prediction 305 333 - -
Cpe18g00918 1170 Gene3D - 246 295 - -
Cpe18g00918 1170 ProSiteProfiles SWIRM domain profile. 22 119 IPR007526 GO:0005515
Cpe18g00918 1170 SMART sant 246 294 IPR001005 -
Cpe18g00918 1170 MobiDBLite consensus disorder prediction 586 675 - -
Cpe18g00918 1170 MobiDBLite consensus disorder prediction 653 667 - -
Cpe18g00918 1170 MobiDBLite consensus disorder prediction 604 630 - -
Cpe18g00918 1170 Pfam Myb-like DNA-binding domain 250 288 IPR001005 -
Cpe18g00918 1170 SMART DUF1767_2 679 772 IPR033472 -
Cpe18g00918 1170 CDD SANT 250 287 IPR001005 -
Cpe18g00918 1170 Gene3D - 728 853 IPR042470 -
Cpe18g00918 1170 MobiDBLite consensus disorder prediction 304 360 - -
Cpe18g00918 1170 ProSiteProfiles SANT domain profile. 245 296 IPR017884 -
Cpe18g00918 1170 Coils Coil 499 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00918 K10990 RMI1, BRAP75; RecQ-mediated genome instability protein 1 K11649 csv:101222548 922.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00918 Cpe-Chr18:8162127 Cpe17g00231 Cpe-Chr17:1492490 5.39E-39 dispersed
Cpe18g00918 Cpe-Chr18:8162127 Cpe06g00612 Cpe-Chr6:3776713 3.78E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g72 . . . Bda15g00681 Bpe12g00472 . . . . . Cma10g00047 . Car10g00036 . Sed01g2393 . . Bhi02g00661 Tan09g2396 Cmetu07g1239 . . . . Cla06g01758 Cam06g1950 Cec06g1999 Cco06g2005 Clacu06g1907 Cmu06g1847 Cre06g2661 . . . Cone19ag0221 . . . . . . . . . . . Bma08g00266 . Cmo10g00042 . . . . . . Cpe18g00918 . . . . . . . . . . . . . . Lsi06g01656 Csa01g00039 Chy02g02680 Cme02g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009523 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00918 Cpe_Chr18 FPKM 19.694725 21.706276 23.544598 21.655491 11.648059 14.568529 13.583659 22.2136 23.476179 22.12603