Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00919 ATGGCTGGCAGTGGTAAAAGGGGTTCTCAACTCGACGTTGAGCAGCAGAAACCCACTCTGATCACCCCCGCAGAGGAGACACCGAAGGTTCTCTACTTCCTATCGAACCTTGACCAGAATATTGCAGTCATCGTCCGCACCATTTACTGCTTTAAATCAGAGTCCAGAGGCAACGAAGATGCTGCCCAAGTCATTAAAGATGCTCTTTCCAAGGTGCTTGTCCATTACTACCCCCTTGCAGGGCGGCTCACCGTCAGCTCAGACAGGAAGCTTATTGTGGACTGTACGGCGGAGGGTGCTGTCTTTGTGGAGGCTAAAGCCGACTGTTCCATTGAAGACATTGGTGATATAACGAAGCCTGATCCTGACACTCTTGGGAAGCTTGTCTATGACATCCCTGGCGCTACCAACATACTTCAGATGCCTCCTCTTGTTGCCCAGGTGACTAAATTTAAATGTGGTGGATTCGTTGTGGGGCTGTGTATGAATCATTGTATGTTTGATGGGATTGGGGCAATGGAATTTGTGAATTCGTGGGGTGAAACGGCAAGGGGCTTGCCTTTGACTGTGCCGCCGTATCTGGATAGAAGCCTTCTCAAAGCACGAGAGCCGCCGATGATCGAGTTTCCTCACAGCGAATTCGCTGAGATAGAAGATGTGTCGAACACTTGGAAGCTTTATGGAGATGAGGAAATGCATTATCGGTCCTTCTGCTTCGAGCCGGAGAAGCTCAGTAAGCTCAAACAGAAAGCGTTGGAAGATGGGGTTTTGAAGAGCTGCACCACGTTCGAAGCCCTGTCGGGATTTGTTTGGAGAGCAAGAACAGAGGCTCTACGAATGCAACCCGACCAACAAACAAAGCTCCTCTTCGCCGTCGACGGAAGGTCTAGATTTCAGCCCCCAGTGCCGAAAGGGTATTCTGGAAACGCCATCGTTTTAACCAACTCACTATGCAGCGCCGGTGAGCTTCTGGAAAACCCTCTGTCTTTTGGGGTGGGGCTGGTTCAGAAGGCAGTGGAGATGATCACAGACAGCTACATGAGGTCCGCCATCGATTACTTCGAAGCGACGAGAGCAAGGCCGTCTCTGGCGGCGACTTTGTTGATCACGACCTGGTCGAGGCTGGGGTTTCACACGACGGACTTCGGGTGGGGGGAGCCGGTGTTTTCAGGGCCGGTGGCATTGCCGGAGAAAGAGGTCATTCTGTTCCTATCTCATGGGAAAGAAAGAAAGAGCATAAATGTTCTTCTGGGCCTTCCAGCTTCTGCCATGGAAATCTTCCAGCAGGCCATGCAAATCTGA 1302 51.31 MAGSGKRGSQLDVEQQKPTLITPAEETPKVLYFLSNLDQNIAVIVRTIYCFKSESRGNEDAAQVIKDALSKVLVHYYPLAGRLTVSSDRKLIVDCTAEGAVFVEAKADCSIEDIGDITKPDPDTLGKLVYDIPGATNILQMPPLVAQVTKFKCGGFVVGLCMNHCMFDGIGAMEFVNSWGETARGLPLTVPPYLDRSLLKAREPPMIEFPHSEFAEIEDVSNTWKLYGDEEMHYRSFCFEPEKLSKLKQKALEDGVLKSCTTFEALSGFVWRARTEALRMQPDQQTKLLFAVDGRSRFQPPVPKGYSGNAIVLTNSLCSAGELLENPLSFGVGLVQKAVEMITDSYMRSAIDYFEATRARPSLAATLLITTWSRLGFHTTDFGWGEPVFSGPVALPEKEVILFLSHGKERKSINVLLGLPASAMEIFQQAMQI 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8170392 8179427 + Cp4.1LG18g09080.1 Cpe18g00919 485380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00919 433 Pfam Transferase family 12 431 - -
Cpe18g00919 433 Gene3D - 8 216 IPR023213 -
Cpe18g00919 433 PANTHER OMEGA-HYDROXYPALMITATE O-FERULOYL TRANSFERASE 12 431 - -
Cpe18g00919 433 Gene3D - 221 432 IPR023213 -
Cpe18g00919 433 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 12 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00919 K15400 HHT1; omega-hydroxypalmitate O-feruloyl transferase [EC:2.3.1.188] - csv:101210256 812.757
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01627 Cpe18g00919 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00335 Cpe-Chr2:1801808 Cpe18g00919 Cpe-Chr18:8170392 1.44E-35 dispersed
Cpe06g00095 Cpe-Chr6:468330 Cpe18g00919 Cpe-Chr18:8170392 1.62E-67 dispersed
Cpe06g00304 Cpe-Chr6:1683716 Cpe18g00919 Cpe-Chr18:8170392 5.96E-41 dispersed
Cpe07g00400 Cpe-Chr7:2600662 Cpe18g00919 Cpe-Chr18:8170392 1.52E-64 dispersed
Cpe17g00274 Cpe-Chr17:1822783 Cpe18g00919 Cpe-Chr18:8170392 7.24E-15 dispersed
Cpe08g00195 Cpe-Chr8:1301509 Cpe18g00919 Cpe-Chr18:8170392 1.38E-70 transposed
Cpe10g00156 Cpe-Chr10:949275 Cpe18g00919 Cpe-Chr18:8170392 3.20E-54 transposed
Cpe18g00919 Cpe-Chr18:8170392 Cpe04g01627 Cpe-Chr4:12601127 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g70 . . Bda06g00718 Bda15g00682 Bpe12g00471 . . Bma12g01088 . . Cma10g00046 Cma11g00021 Car10g00035 Car11g00020 Sed12g2525 . Cpe04g01627 Bhi02g00660 Tan09g2398 Cmetu02g1444 . Hepe09g0033 . . Cla06g01759 Cam06g1951 Cec06g2000 Cco06g2006 Clacu06g1908 Cmu06g1848 Cre06g2662 . . Cone13ag0236 Cone19ag0222 . . . . . Blo15g00199 . . Bpe07g00898 . . Bma08g00267 . Cmo10g00041 Cmo11g00021 . . . . . Cpe18g00919 . . . . . . . . . . . . . . Lsi06g01657 Csa01g00038 Chy02g02681 Cme02g02085
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004260 2 1 1 1 2 0 2 1 1 1 0 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 3 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00919 Cpe_Chr18 FPKM 56.730377 55.75766 42.429688 41.942234 22.767899 27.185759 21.578535 35.408417 35.242043 34.05138