Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00920 ATGCCGGAGGACGATTTTATTGACATTAAGTTCAGGCTCTACGATGGTTCTGATATTGGACCCTTTCGATACTCGTCCGCATCCACAATAGATGTGCTCAAGCAGAGAATAGTGTCCGATTGGCCCAAAGGCAAAACAATCACTCCGAAGGCAGCCAGTGAAGTAAAACTGATAAGTTCTGGAAAAATTTTGGAAAATAACAAGACTGTTGGTCAGTGTAAATTACCTTTTGGTGAGTCCACGGGAGGAGTCACCATAATGCATGTTGTTGTACAGCCATCCCTAGCGAAAGCTAAGACAGGTGATTTCCTTTGA 315 43.49 MPEDDFIDIKFRLYDGSDIGPFRYSSASTIDVLKQRIVSDWPKGKTITPKAASEVKLISSGKILENNKTVGQCKLPFGESTGGVTIMHVVVQPSLAKAKTGDFL 104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8181804 8184244 - Cp4.1LG18g09240.1 Cpe18g00920 485381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00920 104 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 101 IPR040015 -
Cpe18g00920 104 PIRSF MUB 1 102 IPR017000 -
Cpe18g00920 104 ProSiteProfiles Ubiquitin domain profile. 7 75 IPR000626 GO:0005515
Cpe18g00920 104 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 3 1 101 - -
Cpe18g00920 104 SUPERFAMILY Ubiquitin-like 2 96 IPR029071 -
Cpe18g00920 104 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 100 IPR039540 -
Cpe18g00920 104 Gene3D - 1 100 - -
Cpe18g00920 104 CDD Ubl_MUBs_plant 7 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00920 - - - csv:101210505 196.823
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01630 Cpe18g00920 CCT
Cpe04g01630 Cpe18g00920 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01630 Cpe-Chr4:12621713 Cpe18g00920 Cpe-Chr18:8181804 1.17E-68 dispersed
Cpe13g00971 Cpe-Chr13:8089865 Cpe18g00920 Cpe-Chr18:8181804 2.58E-30 dispersed
Cpe18g00920 Cpe-Chr18:8181804 Cpe03g00639 Cpe-Chr3:3802531 9.05E-50 wgd
Cpe18g00920 Cpe-Chr18:8181804 Cpe04g01629 Cpe-Chr4:12620166 6.52E-67 wgd
Cpe18g00920 Cpe-Chr18:8181804 Cpe04g00471 Cpe-Chr4:5390797 1.43E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g67 . Blo16g00283 Bda06g00716 . . Bpe13g00192 Bma06g00274 . . . Cma10g00041 Cma11g00019 Car10g00032 Car11g00018 Sed08g1505 . Cpe04g01630 Bhi02g00657 Tan09g2404 Cmetu02g1332 . Hepe09g0030 . . Cla06g01761 Cam06g1954 Cec06g2004 Cco06g2009 Clacu06g1912 Cmu06g1852 Cre06g2665 Cone2ag0992 . Cone13ag0240 Cone19ag0225 . . . . . . Bda11g01585 Bda14g01344 Bpe07g00900 Bpe15g00235 Bma03g01234 . . Cmo10g00038 Cmo11g00018 . . . . . Cpe18g00920 . . . . . . . . . . . . . . Lsi06g01659 Csa01g00033 . Cme02g02088
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001180 3 2 2 2 3 2 4 2 2 0 2 2 3 2 2 5 2 4 5 2 2 3 1 2 3 2 2 5 3 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00920 Cpe_Chr18 FPKM 5.003187 5.625309 83.995613 88.249664 102.752548 92.236237 108.209 43.742561 46.951267 46.119751