Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00922 ATGGCCATCCCCCCCCAAACTCTGGCTTTTGTCTTTGGCCTTTTAGGCAACATTATCTCCTTCATGGTCTTCCTAGCTCCACTGCCAACCTTTTACAAGATATACAAGAAGAAGTCCGCGGAAGGATACCAATCCTTACCCTATGTGGTTGCACTATTCAGCGCCATGCTTTGGATTTACTATGCCCTTCTCAAAACCAACGCAACCTTCCTCATTACCATCAACTCCTTTGGCTGTGTAATTGAGACCCTTTACATCCTTCTCTTCGTATTCTACGCCCCCACAAAATTGAGGGGCAAGGTGATGAAGACCAAGAGCGTGGAGTACATGCCCTTTGCTCTCTCCTTCTTTCTCACTCTCAACGCAGTCATGTGGTTCTTTTACGGCCTTCTTCTCAAGGACTATTACATTGCGCTTCCCAACGTGGTGGGGTTCGTGTTTGGCATAATCCAGATGATCCTGTACGTCATATTCAAGAACGCAAAGAAAGGCATCCCGGTGAAAGAAGAGCAGCAGCCAAAGGCGCAGCAGCTTCACGAACTGTCGGAGCAAATAATCGACGCGGTGAAGCTTGGGACGATGGTGTGCACGGAGCTAAGCCCGGTGGGGGTTCTTCAGCCAAGCATGGAGGTGGTGGACGTTGTGGTGGAAGCCGTGATTGACAACATTCAGAAGAAGAAGGAAGAAATAACAAGCTGA 699 48.78 MAIPPQTLAFVFGLLGNIISFMVFLAPLPTFYKIYKKKSAEGYQSLPYVVALFSAMLWIYYALLKTNATFLITINSFGCVIETLYILLFVFYAPTKLRGKVMKTKSVEYMPFALSFFLTLNAVMWFFYGLLLKDYYIALPNVVGFVFGIIQMILYVIFKNAKKGIPVKEEQQPKAQQLHELSEQIIDAVKLGTMVCTELSPVGVLQPSMEVVDVVVEAVIDNIQKKKEEITS 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8191155 8192783 - Cp4.1LG18g09250.1 Cpe18g00922 485383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00922 232 PANTHER RAG1-ACTIVATING PROTEIN 1 4 98 - -
Cpe18g00922 232 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 4 98 - -
Cpe18g00922 232 PANTHER RAG1-ACTIVATING PROTEIN 1 100 204 - -
Cpe18g00922 232 Gene3D - 97 172 - -
Cpe18g00922 232 Gene3D - 11 96 - -
Cpe18g00922 232 Pfam Sugar efflux transporter for intercellular exchange 11 96 IPR004316 GO:0016021
Cpe18g00922 232 Pfam Sugar efflux transporter for intercellular exchange 98 163 IPR004316 GO:0016021
Cpe18g00922 232 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 100 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00922 K15382 SLC50A, SWEET; solute carrier family 50 (sugar transporter) - csv:101210005 327.405
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe18g00922 Cpe20g00293 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00825 Cpe-Chr7:7453510 Cpe18g00922 Cpe-Chr18:8191155 7.95E-16 dispersed
Cpe18g00922 Cpe-Chr18:8191155 Cpe08g00176 Cpe-Chr8:1222674 3.75E-41 dispersed
Cpe18g00922 Cpe-Chr18:8191155 Cpe18g00923 Cpe-Chr18:8194804 1.72E-28 tandem
Cpe18g00922 Cpe-Chr18:8191155 Cpe20g00293 Cpe-Chr20:1640104 1.57E-37 wgd
Cpe18g00922 Cpe-Chr18:8191155 Cpe04g01632 Cpe-Chr4:12629845 1.24E-116 wgd
Cpe18g00922 Cpe-Chr18:8191155 Cpe09g00947 Cpe-Chr9:8490911 6.83E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g62 . . . Bda15g00684 Bpe12g00468 . . . Cmo13g00855 Cmo18g00234 . Cma11g00017 Car10g00030 Car11g00015 Sed12g2535 Cpe20g00293 . Bhi02g00653 Tan09g2407 . . Hepe09g0028 . . . . . . . . . . Cone16ag0001 Cone13ag0243 Cone19ag0226 . . Chy12g01148 Cme12g01568 . . . Bda14g01343 . Bpe15g00236 . Bma08g00269 Sed08g2418 Cmo10g00036 Cmo11g00016 Cma13g00824 . Car13g00668 . . Cpe18g00922 Bhi08g01529 Tan05g3000 Cmetu12g1505 Lac10g0605 Hepe07g2090 . . Cla03g00373 Cam03g0393 Cec03g0379 Cco03g0394 Clacu03g0392 Cmu03g0997 Cre03g0689 Lsi06g01663 Csa01g00031 Chy02g02684 Cme02g02090
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008824 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00922 Cpe_Chr18 FPKM 36.409447 38.494736 13.827636 14.663399 28.698647 27.120171 27.893854 27.409464 23.259243 23.760241