Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00931 ATGTACTCTCCCTCTCACTTGTGTGTTTATGGTATGCATTATATATTAAGTGCTTCTAATTTAACCTCTGCTTATTCCCATTACCAGAAGGAGGACCCAAATGAAAGAGGGGGCGACGGCAAGAGGAGAGGCTACAAGCGTGCAAAAGCAGGAGGAGGCCGCAAGAAGCTCAAAACCCAAGACCACCCTCAAGTTCCTCCACCACCAGGGTACATCCACGTAAGAGCCAGGAGGGGTCAGGCCACAGACCGCCACAGCCTTGCAGAAAGGGTGAGAAGACAGAAAATCAGCCAAAGGATGAAGGTTCTGCAGACGCTTGTTCCAGGCTGCCACAAGGTAACTGGGAAGGCCCTTATGCTGGACGAAATTATTAACTATGTTCAGTCCCTGCAAAGTCAAATTGAGCTTCTGTCCATGGAGCTTGCTTCTGTTCACCCCATCCGCTATGACTTTGGAATGGATAATCCAGAGGTATTCATCGGTACGCCAGTCACACAGGTATTGAACGGGAGTGGCATGGTGTCACGTTCAGAGCAGGCAGAATTGGCATATAATATGGCGTCATGCAACACATTTCAGGCCACAGGCGGTGGCGGTGGCGGTGGTGACAGCCCAATCTTAACGGCTGAAAACGGCAGCTTTATCCCAGTGGACATGAATCCATCTCAACTTTTCCTGGATTATGGGAATGCTTCTCTGCAACATCTGTCATGA 714 49.58 MYSPSHLCVYGMHYILSASNLTSAYSHYQKEDPNERGGDGKRRGYKRAKAGGGRKKLKTQDHPQVPPPPGYIHVRARRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIELLSMELASVHPIRYDFGMDNPEVFIGTPVTQVLNGSGMVSRSEQAELAYNMASCNTFQATGGGGGGGDSPILTAENGSFIPVDMNPSQLFLDYGNASLQHLS 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8230223 8231813 - Cp4.1LG18g09440.1 Cpe18g00931 485392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00931 237 SMART finulus 86 136 IPR011598 GO:0046983
Cpe18g00931 237 MobiDBLite consensus disorder prediction 29 69 - -
Cpe18g00931 237 Pfam Helix-loop-helix DNA-binding domain 84 131 IPR011598 GO:0046983
Cpe18g00931 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 145 IPR036638 GO:0046983
Cpe18g00931 237 PANTHER BHLH-TRANSCRIPTION FACTOR 29 189 - -
Cpe18g00931 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 80 130 IPR011598 GO:0046983
Cpe18g00931 237 MobiDBLite consensus disorder prediction 29 46 - -
Cpe18g00931 237 CDD bHLH_AtBPE_like 70 154 - -
Cpe18g00931 237 Gene3D - 77 147 IPR036638 GO:0046983
Cpe18g00931 237 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 29 189 IPR024097 GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe18g00931 Cpe20g00290 CCT
Cpe09g00944 Cpe18g00931 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00931 Cpe-Chr18:8230223 Cpe17g01125 Cpe-Chr17:8540065 2.47E-44 dispersed
Cpe18g00931 Cpe-Chr18:8230223 Cpe20g00290 Cpe-Chr20:1619873 2.41E-45 wgd
Cpe18g00931 Cpe-Chr18:8230223 Cpe09g00944 Cpe-Chr9:8454037 6.73E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50939 PF00010 HLH 6.70E-07 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00931 - - cmos:111429828 378.637