Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00938 TCCGTGAACATCATGGCTGGAGTTCTGGTTCAGTCCACAGATATTCCTGGTCTGATCGGTGGGAGAAAGAATAGCCTATCAGGAGGGTCAGGAGATACAAAGCGGCCTGTTAAAATGATGGCCTGCGTACATGCACCTGGTTTGAGAATCAGAAGTTTCTCTGGACTTCGAGGATTTAATTCTTTGGATAACATGTTGCGAAATGGACAAGATTTTCATTCCAGGGTGGCCATTACAATCTCGTCTAGGCGACGAAAGGCTAGCAGATGTGTTCCAAAAGCTATGTTTGAGCGATTCACAGAAAAGGCAATTAAAGAACCAACAAGTGGGAAGAAGAGTCTATTAATGGTATGCGATGAGGGTGGTCCAAGACTCCAGAAGGCAGGAATTACTTGTGTAGAAGGCCACTCCGTGAACATCATGGCTGGAGTTCTGGTTCAGTCCACAGATATTCCTGGTCTGATCGGTGGGAGAAAGAATAGCCTATCAGGAGGGTCAGGAGATACAAAGCGGCCTGTTAAAATGATGGCCTGCGTACATGCACCTGGTTTGAGAATCAGAAGTTTCTCTGGACTTCGAGGATTTAATTCTTTGGATAACATGTTGCGAAATGGACAAGATTTTCATTCCAGGGTGGCCATTACAATCTCGTCTAGGCGACGAAAGGCTAGCAGATGTGTTCCAAAAGCTATGTTTGAGCGATTCACAGAAAAGGCAATTAAAGTTATCATGCTTGCTCAGGAGGAAGCGAGGCGGCTTGGTCACAATTTTGTTGGCACAGAGCAGATACTTTTAGGTCTTATTGGTGAAGGCACTGGAATCGCTGCTAAGGTTCTTAAATCTATGGGAATCAATCTTAAGGATGCGCGCGTGGAGGTGGAGAAGATAATTGGTCGGGGCAGTGGCTTTGTTGCTGTAGAAATTCCGTTCACTCCTCGTGCAAAGCGTGTATTGGAACTTTCTCTTGAGGAAGCTCGCCAACTTGGCCACAATTATATTGGGTCGGAGCACTTGCTTCTAGGACTACTTCGGGAAGGTGAGGGCGTTGCAGCTCGTGTTATTCGAATGGTGGGTGAGAGCACAGAGGCTGTTGGTGCTGGTGTTGGAGGAGGAAGCAGTGGGAACAAGATGCCAACCCTGGAAGAGTACGGCACAAACTTAACTAAGCTGGCTGAAGAGGGTAAACTAGATCCTGTTGTTGGAAGGCAGCAACAAATAGAACGTGTAACCCAAATTTTGGGTCGGCGGACAAAAAATAATCCTTGCCTCATTGGTGAACCTGGTGTTGGAAAAACTGCTATTGCAGAAGGTCTGGCCCAAAGGATTGCTAATGGGGATGTCCCTGAAACAATAGAAGGAAAGAAGGTTATAACTCTGGATATGGGCCTTCTTGTAGCTGGCACGAAATATCGTGGAGAGTTTGAGGAAAGATTAAAGAAACTGATGGAGGAAATTAAACAAAGTGATGAGATTATCCTTTTCATTGATGAGGTGCACACGTTAATTGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAATATATTGAAACCTGCCCTTGCAAGAGGTGAACTGCAGTGCATTGGAGCCACGACATTGGATGAATACAGGAAGCACATTGAAAAAGACCCAGCCTTAGAAAGGAGATTTCAGCCAGTGAAAGTGCCGGAACCATCTGTGGATGAAACCATACAGATTTTGAAAGGCCTTAGAGAGCGCTATGAAATCCACCACAAACTTCGTTACACAGATGAAGCATTAGTAGCTGCTGCGCAGCTGTCATACCAGTACATCAGTGATCGATTCTTGCCTGATAAGGCAATCGACTTGGTTGATGAAGCAGGTTCTCGGGTTCGCCTTCGTCATGCTCAACTACCTGAAGAAGCCAGGGAGCTTGAGAAAGAGCTGAGGCAGATCACAAAGGAGAAGAATGAGGCTGTTCGAAGTCAAGACTTTGAGAAGGCTGGAGAATTGCGTGATAGAGAAATGGAACTTAAGACTAAGATATCTGCTCTAGTAGATAAGGGCAAGGAGATGAGCAAGGCTGAAAGTGAGGCAGGAGATGTAGGCCCTGTTGTTACTGAAGTTGATATTCAGCATATTGTCTCCTCCTGGACTGGCATTCCTGTCGAGAAAGTATCTACTGATGAATCTGATCGCCTCCTCAAAATGGAAGAGACCCTCCATAAAAGGGTCATTGGTCAAGATGAAGCAGTTAAAGCTATCAGCCGTGCCATACGCCGAGCTCGTGTTGGGCTCAAGAATCCCAACCGTCCAATTGCAAGCTTTATATTTTCTGGCCCAACTGGTGTTGGTAAATCTGAGTTAGCTAAAGCATTGGCTGCATACTATTTTGGGTCTGAAGAAGCAATGATTCGACTTGACATGAGTGAGTTTATGGAAAGGCACACTGTCTCCAAGCTTATTGGTTCTCCTCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTAACCGAGGCCGTTCGTCGTCGTCCGTACACAGTGGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTGTTCAATATGATGCTTCAAATTTTGGAGGATGGAAGGTTGACGGATAGCAAGGGCCGGACTGTAGACTTCAAAAATACACTTTTGATAATGACATCAAACGTGGGAAGTAGTGTTATAGAGAAGGGAGGTCGCAGGATAGGGTTTGACCTTGATTATGACGAGAAGGATAGTAGTTATAACCGGATCAAGAGCTTGGTGACGGAGGAACTGAAACAATACTTCAGGCCTGAGTTTTTGAATAGGTTGGACGAGATGATTGTCTTCCGTCAACTCACAAAACTGGAGGTGAAGGAGATTGCGGATATAATGCTAAAGGAGGTATTTGACAGATTAAAAACAAAAGAAATTGACCTTCAAGTGACAGAGAGATTTAGAGATAGAGTGGTGGAGGAAGGATATAACCCAAGCTACGGTGCGAGACCATTGAGAAGGGCCATAATGAGGCTTTTGGAGGACAGCATGGCTGAGAAAATGCTGGCAAGGGAGATCAAAGAGGGCGACTCGGTAATAGTGGATGTTGATTCCGACGGAAACGTGACAGTACTCAACGGCAGCAGTGGTGCTCCCGAGTCCTTGCCGGATGCTATCCCCGTGTGA 3144 45.87 SVNIMAGVLVQSTDIPGLIGGRKNSLSGGSGDTKRPVKMMACVHAPGLRIRSFSGLRGFNSLDNMLRNGQDFHSRVAITISSRRRKASRCVPKAMFERFTEKAIKEPTSGKKSLLMVCDEGGPRLQKAGITCVEGHSVNIMAGVLVQSTDIPGLIGGRKNSLSGGSGDTKRPVKMMACVHAPGLRIRSFSGLRGFNSLDNMLRNGQDFHSRVAITISSRRRKASRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMELKTKISALVDKGKEMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKEIDLQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLPDAIPV 1047
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8256920 8267625 - Cp4.1LG18g09410.1 Cpe18g00938 485399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00938 1047 Gene3D - 712 938 IPR027417 -
Cpe18g00938 1047 Pfam C-terminal, D2-small domain, of ClpB protein 940 1020 IPR019489 -
Cpe18g00938 1047 ProSitePatterns Chaperonins clpA/B signature 1. 512 524 IPR018368 GO:0005524
Cpe18g00938 1047 Pfam Clp amino terminal domain, pathogenicity island component 246 298 IPR004176 -
Cpe18g00938 1047 Pfam Clp amino terminal domain, pathogenicity island component 322 363 IPR004176 -
Cpe18g00938 1047 ProSiteProfiles UVR domain profile. 634 669 IPR001943 GO:0005515
Cpe18g00938 1047 ProSitePatterns Chaperonins clpA/B signature 2. 794 812 IPR028299 -
Cpe18g00938 1047 PANTHER ATP-DEPENDENT CLP PROTEASE 215 1047 - -
Cpe18g00938 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 659 IPR027417 -
Cpe18g00938 1047 Gene3D - 562 706 - -
Cpe18g00938 1047 ProSiteProfiles Clp repeat (R) domain profile. 232 375 IPR004176 -
Cpe18g00938 1047 CDD AAA 734 882 - -
Cpe18g00938 1047 CDD AAA 400 552 - -
Cpe18g00938 1047 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 215 1047 - -
Cpe18g00938 1047 Coils Coil 471 491 - -
Cpe18g00938 1047 Pfam AAA domain (Cdc48 subfamily) 759 933 IPR003959 GO:0005524|GO:0016887
Cpe18g00938 1047 Gene3D - 940 1036 - -
Cpe18g00938 1047 Gene3D - 231 368 IPR036628 -
Cpe18g00938 1047 SMART AAA_5 417 557 IPR003593 -
Cpe18g00938 1047 SMART AAA_5 760 941 IPR003593 -
Cpe18g00938 1047 Gene3D - 369 560 IPR027417 -
Cpe18g00938 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 709 1026 IPR027417 -
Cpe18g00938 1047 Coils Coil 623 650 - -
Cpe18g00938 1047 Gene3D UVR domain 626 690 - -
Cpe18g00938 1047 SUPERFAMILY Double Clp-N motif 233 343 IPR036628 -
Cpe18g00938 1047 Pfam ATPase family associated with various cellular activities (AAA) 422 538 IPR003959 GO:0005524|GO:0016887
Cpe18g00938 1047 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 871 885 IPR001270 GO:0005524
Cpe18g00938 1047 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 809 827 IPR001270 GO:0005524
Cpe18g00938 1047 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 838 856 IPR001270 GO:0005524
Cpe18g00938 1047 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 764 782 IPR001270 GO:0005524
Cpe18g00938 1047 SMART ClpB_D2_small_2 940 1030 IPR019489 -
Cpe18g00938 1047 Pfam AAA lid domain 560 661 IPR041546 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00938 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC - csv:101207083 1642.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00853 Cpe-Chr2:5549041 Cpe18g00938 Cpe-Chr18:8256920 1.93E-13 dispersed
Cpe02g01249 Cpe-Chr2:11248815 Cpe18g00938 Cpe-Chr18:8256920 3.27E-55 dispersed
Cpe06g00301 Cpe-Chr6:1663687 Cpe18g00938 Cpe-Chr18:8256920 0 dispersed
Cpe06g00854 Cpe-Chr6:5532986 Cpe18g00938 Cpe-Chr18:8256920 0 dispersed
Cpe09g00136 Cpe-Chr9:800254 Cpe18g00938 Cpe-Chr18:8256920 6.91E-12 dispersed
Cpe18g00938 Cpe-Chr18:8256920 Cpe20g00808 Cpe-Chr20:7324212 2.12E-43 dispersed
Cpe18g00938 Cpe-Chr18:8256920 Cpe04g01638 Cpe-Chr4:12655195 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g29 . . Bda06g00709 Bda15g00698 . . . . . . Cma10g00018 Cma11g00007 Car10g00013 Car11g00006 . . . . . . . . . . Cla06g01783 Cam06g1977 Cec06g2027 Cco06g2035 Clacu06g1934 Cmu06g1875 Cre06g2687 . . Cone13ag0256 Cone19ag0241 . . . . . Blo15g00190 . . Bpe07g00907 . . . . Cmo10g00016 Cmo11g00006 . . . . . Cpe18g00938 . . . . . . . . . . . . . . Lsi06g01681 Csa01g00010 Chy02g02703 Cme02g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00938 Cpe_Chr18 FPKM 12.722928 15.336736 19.667423 20.569496 24.723373 22.260027 23.264574 14.698013 14.099778 14.157818