Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00939 ATGGCCTCCTCCGAGGTTTCCATCAACCCCAATTCCGCCTCCGTTCCCTTCAACGACCATGCCGATTCTACCAAACTCACCTCCGATCCACCTAACGCTCTCTCTGCCAGGGATGCTGATTTCGCCCTCTTCACCGAGCTTTGGAATGCTTGTGCTGGTCCTCTCGTTTCTGTTCCTCGCGAAAACGACCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCCACCAGTCAAGTGGCGGACCAACAGATGCCAGTTTATGACCTTCCATCCAAGATCCTCTGCCGCGTTATTAATGTGCATTTAAAGGCCGAGCCAGACACCGATGAGGTATTTGCACAAATAACTTTGGTTCCAGAGGCAAATCAAGATGAGCATGCTGTGGACAAGGAACCCCCGCCTCCTCCACCTCGGAGATTTCACGTGCATTCTTTTTGCAAGACTCTGACTGCCTCCGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGTCACGACAGCCTCCTACACAGGAGTTGGTTGCCAAGGATTTGCATGGAAATGAATGGCGTTTTCGTCATATATTTCGAGGACAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCGGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGTGTTGGTGTTAGGCGTGCCATGAGACAACATGGTAACGTCCCTTCATCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCATGGCATGCTATTTCTACAGGCACAATGTTCACTGTCTACTACAAGCCTAGGACTAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGAGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAGCAGAGATTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGTCTGAAGGTGAGATGGGATGAGACTTCTACTATTTCTCGTCCTGAGAAAGTCTCACCATGGAAAATTGAGCCTGCTCTTGCTCCTCCTGCACTGAACCCTCTTCCTATGACTAGACCTAAAAGGCCTCGATCAAACATGGTGCCTACATCCCCTGATTCCTCTGTTCTTACACGAGAAGGCTCATCAAGAGTGACTGTAGACCCTTCACCAGTCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTAAGGGGCAATTTTATCGATGGCAATGATCCTGATGCTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAAATTGATGTGGTTTCTACATCTAAGAAACATGGAGCAGATTGCTGGATAACTCCAGGAAGGAGTGAGCCAACCTACGCAGATCTTCTGTCAGGTTTTGGAACTAATATTGATTCATCTCATGGTGTCCGAGCTGGCATGGGAGATCCAGCAGTAGTAACTGCTAATTCAATCAGAAAGCATGTCATGGATCAAGATGGAAAGTTTAATTTCCTTGGTGGTAGCTCATGGTCTGTCTTGCCTTCTAGTCTCTCGCTCAACCTTGTGGACTCTAGTCAGAAGGGCCATATTCAGGCTGGTGACTTATCTTATCAAGTGAGAGGAAATGCTACCTTCAATGGATTTGGTGATCATTCCGTGGCCCATTGTCATAGAACAGAACAGCCTCATGGAAACTGGTTGATGGCTCCACTTTCGTCTCATTTTGATTATCCAGTTCACTCAACTGAACTGATGTCGATGCCTATGGTATTTCAGAATCAAGATATAATGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCATTAAGAATCCTGCCATTCCAGACCCTGCAGGATTGAATAGAAATATGAATGGGGCAGATGTTACGCATCTGAATATACATCAAATCCATTCAAACGAGTCTGACCTCAAGTCTGAACCGTTTAGGGGTTCAATGTTGGCTGATAAATCCCTTGCCATTAATGATGCCGATAAGTTGCAGCAAACATGCACGCAAAACTTGAAGGATGCACACTGCAAATCACAGGGTACTTCAGCAAGGAGTTGTACAAAGGTCCAGAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAGGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAGTTTGGTGGCGAGCTGCTGGCTCCCAAAAAGAATTGGCTTATTGTATATACGGATGATGAAGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCGAGGATCTCTAAATTTGAAAGGCGATGAAAATCCATCTGTAGAAGGGAAAGAAGCAAAAGAGATTGAAGGTCAGGCAGTACCTTCGATATCCGCACCCGAGAGTTCTTAG 2553 45.87 MASSEVSINPNSASVPFNDHADSTKLTSDPPNALSARDADFALFTELWNACAGPLVSVPRENDRVFYFPQGHIEQVEASTSQVADQQMPVYDLPSKILCRVINVHLKAEPDTDEVFAQITLVPEANQDEHAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVPTSPDSSVLTREGSSRVTVDPSPVSAFTRVLQGQEFSTLRGNFIDGNDPDAAEKSVMWPPSLDDEKIDVVSTSKKHGADCWITPGRSEPTYADLLSGFGTNIDSSHGVRAGMGDPAVVTANSIRKHVMDQDGKFNFLGGSSWSVLPSSLSLNLVDSSQKGHIQAGDLSYQVRGNATFNGFGDHSVAHCHRTEQPHGNWLMAPLSSHFDYPVHSTELMSMPMVFQNQDIMKPKDGNCKLFGISLIKNPAIPDPAGLNRNMNGADVTHLNIHQIHSNESDLKSEPFRGSMLADKSLAINDADKLQQTCTQNLKDAHCKSQGTSARSCTKVQKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELLAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNRGSLNLKGDENPSVEGKEAKEIEGQAVPSISAPESS 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8268551 8280118 - Cp4.1LG18g09430.1 Cpe18g00939 485400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00939 850 SUPERFAMILY DNA-binding pseudobarrel domain 146 278 IPR015300 -
Cpe18g00939 850 Gene3D - 312 382 - -
Cpe18g00939 850 PANTHER AUXIN RESPONSE FACTOR 2 30 832 - -
Cpe18g00939 850 CDD B3_DNA 147 249 IPR003340 GO:0003677
Cpe18g00939 850 Gene3D - 146 251 IPR015300 -
Cpe18g00939 850 Pfam Auxin response factor 275 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe18g00939 850 Pfam AUX/IAA family 711 807 IPR033389 -
Cpe18g00939 850 SUPERFAMILY CAD & PB1 domains 725 802 - -
Cpe18g00939 850 MobiDBLite consensus disorder prediction 816 850 - -
Cpe18g00939 850 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 832 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe18g00939 850 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Cpe18g00939 850 ProSiteProfiles PB1 domain profile. 725 809 IPR000270 GO:0005515
Cpe18g00939 850 MobiDBLite consensus disorder prediction 383 423 - -
Cpe18g00939 850 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Cpe18g00939 850 SMART B3_2 149 251 IPR003340 GO:0003677
Cpe18g00939 850 MobiDBLite consensus disorder prediction 1 31 - -
Cpe18g00939 850 Gene3D - 721 814 - -
Cpe18g00939 850 MobiDBLite consensus disorder prediction 398 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02387 Cpe-Chr1:19949331 Cpe18g00939 Cpe-Chr18:8268551 0 dispersed
Cpe08g01328 Cpe-Chr8:9539692 Cpe18g00939 Cpe-Chr18:8268551 8.79E-24 dispersed
Cpe16g00530 Cpe-Chr16:6226242 Cpe18g00939 Cpe-Chr18:8268551 2.55E-78 dispersed
Cpe17g01020 Cpe-Chr17:7722341 Cpe18g00939 Cpe-Chr18:8268551 1.31E-30 dispersed
Cpe18g00939 Cpe-Chr18:8268551 Cpe11g00650 Cpe-Chr11:4296398 5.17E-17 dispersed
Cpe18g00939 Cpe-Chr18:8268551 Cpe14g00449 Cpe-Chr14:2820937 2.58E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50940 PF02309 AUX_IAA 1.90E-11 CL0072 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00939 - - cmos:111429821 1662.89