Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00943 ATGGATCCGGAAGCCCTCTCAGCAACTTTGTTCAAATGGGATCCTCGAGGAATGGTGGGGGGCGGCAGCGGTGCATCCCTCCCAGCACCACTACCCCCCTACTCGCTGCGCCCCAGGGAGTTGGGATTAGGAGGCCTGGAGGAGTTGTTCCAGGCTTACGGTATCAGGTACTACACCGCCGCTAAAATTGCGGAACTCGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTGGAGGACATGATGAACAGCCTCTCTCACATTTTCCGTTGGGAGCTTCTGGTGGGTGAGAGGTACGGAATTAAGGCGGCTATAAGAGCCGAGCGCAGACGTCTAGATGACGAGATCGACCCCTCCAGGCGCCGTCACCTCATGTCCAACGACACCACCACCAACGTCGTCCTCGATGCCCTCTCTCAGGAAGGGCTATCGGAGGAGCCGGTGCAGCAGGAGAAGGAGGTGGTGGGAAGCGGAGGCGGAGGAGGAGCGTGGGAGGCAGTTGCAGCAGCTGAGATGAGGAAGAAGCAGCGGAGGAGAAACGTATCGAAGAAGAAGCAGGTGATAGTGATGGAGGAGGATAATGAGGAAACCGAGGGAGGTGGGGAGGAGGAGGAGAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAACCAGGGGAGGTTGCACGGGGAAAGAAGAACGGCCTCGACTATCTCTTCCACCTCTATGAGCAGTGTCGTCAATTTTTGATCCAGGTCCAGAACATTGCCAAGGAACGAGGAGAAAAATGCCCCAATAAGGTGACGAACCAGGTGTTTAGATACGCGAAGAAGGCGGGAGCAAGTTACATAAACAAGCCCAAAATGAGACACTACGTGCACTGCTATGCGCTGCATTGTCTGGACGAGGAAGCGTCGAATTCATTGAGGAGGGTTTTCAAAGAAAGGGGCGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTCTGGTAGCCATAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTACGTGCCTACCAAACTCCGCCAACTCTGCCACGCCGAGCGCAACAGTTCCACAGCCTCCACCTCCGCTGCCGCCGCTCTCTTGCCTTTTTAA 1161 55.64 MDPEALSATLFKWDPRGMVGGGSGASLPAPLPPYSLRPRELGLGGLEELFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSHIFRWELLVGERYGIKAAIRAERRRLDDEIDPSRRRHLMSNDTTTNVVLDALSQEGLSEEPVQQEKEVVGSGGGGGAWEAVAAAEMRKKQRRRNVSKKKQVIVMEEDNEETEGGGEEEENMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRQFLIQVQNIAKERGEKCPNKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNSLRRVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNSSTASTSAAAALLPF 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8306325 8308760 - Cp4.1LG18g09380.1 Cpe18g00943 485404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00943 386 Gene3D Protein LEAFY 212 380 IPR038276 -
Cpe18g00943 386 MobiDBLite consensus disorder prediction 194 215 - -
Cpe18g00943 386 PANTHER PROTEIN LEAFY 1 385 - -
Cpe18g00943 386 Pfam Floricaula / Leafy protein SAM domain 43 118 IPR035079 -
Cpe18g00943 386 PANTHER PROTEIN LEAFY 1 385 IPR002910 GO:0003677|GO:0006355
Cpe18g00943 386 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 211 374 IPR035209 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01641 Cpe18g00943 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00943 Cpe-Chr18:8306325 Cpe04g01641 Cpe-Chr4:12681987 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50941 PF17538 C_LFY_FLO 6.80E-108 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00943 - - cmax:111484867 670.233