Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00944 ATGACGTCGCTGTATCGGTGCCGGAGGGGTAAGCTGAAGATGTTGCAGAAGCAGAGATACTTGGACCGCCAAAGGATTACTTCCGCCCTTCTTGCTACCTCTGCCTATGCTTTACCAGGCCCCCTTCGAATTCCAAAGGTTCCACTTTCTTCACTCCTTCCTTTCACCTCTTCTCCCATACATGTACACTATACCTCTTGCGCTTCTCTTCCCAATCCTCTTCCACTCCTCAATTTCATGTCAATTCGCTGCATTTGTTTTCTGCCTCCGTCTCCTCCCTCTTCCATTCCCTGGAATTCTAATGAACTTGAGGACGCAAATTCTACTTCTAAGTTCACCGTAAAAGCAGGTTATCAAACCCTTTATCGTGTTCTTGAAGCCTGCAGACTCTCCCCCTCGAATTCCAAAACCGCTTCTGAAACGCATGCAAGAATGATTAAATTTGGATATGGAAACTACCCAACTCTCGTCACCTCTTTAGTATCAGCTTATCAACGTGCCGATTGCCTTAATCGGGTCCATCAACTTCTTAATCTACTCTGCTCTAAACATCTTGATTTAGTTGCAATGAACTTATTTATTGACAATTTTATGAAAATAGGGGAATGCAAACTTGCTAAAAGGGTGTTTGATAAAATGCCTTACCGTGATGTGGTAACGTGGAACTCAATCATCGGAGGTTGTGTGAAGAATGCACGGTATGAGGAGGCATTTAAATTCTTTAGGCAGATGCTGAACTCAAATATCCAGCCGGATGGGTTTACGTTTGCTTCCGTGTTGAATGCATGTGCGCAGCTCGGAGCTCCAAGTAACACTCAGTGGGTTCATGCTCTGATGACTCAGAAAAAAATTGAGCTTAATTCTATATTGAGTTGTGCACTCATAGACGCCTACTCAAAGTGTGGCAGCATCCAAATTGCAAAGGAAATCTTTAGCAGCGTCCCTCGCAGTAACATCTCAAGTTGCGGAAAAAGCTGGATTGAGTTGGGAGGTTCCATTCAAAGCTTCAAGTCAGGTGACCGATCGCATCCAGAAAGCGATGCAGTGTACAAGGTGGTGTGGCGTTTGATGAAGAGAAGTCGGTCAGAGGGATATATGCCTGTGACAGACTTGGTTCTCATGGATATCTCTGAGGAGGAGAAGGAAGAGAACTTATCATATCACAGCGAAAAGTTGGCATTGGCGTATGCGATCCTGAAAACTAGTCCAGGGGCAAAAATCAGTATATCAAAGAACCTACGGATGTGTGATGATTGTCATAGATGGATAAAACTAGTTTCAACACTGCTGTGCAGAGTTGTAGTAGTGAGAGATCGGATCCGGTTTCATCAATTCGAAGGTGGCATGTGTTCCTGTGGTGATCGTTGGGTCGCATTGAAAGACAAGTTATATATTTTAACTTTTGGACAACGAAACCATGTTTGGTTGAATGAGGGATCAATTACAATTCCTCCTTATGCTCCTCCTCAGGAAATGCAGGCCCACCTCATGATTGGAGGCGTCCCTGTTATTTGTATAGATGAGAAAGATTGTTTGCATGAAGAAGGTGCACTTACATTCCGCCTGCCGTTCAGCTTGGCCAACCTTGAGCTCACATTCACGATGCGAGCACCAGCAGACGAAGAAAACAGAATGGTGAGAAGGAAAAGAAAGAGACCTCTGGTGATCGGACTCATTGCCTCTTTCCTTCCTGCCCATCTCGGTTCGGCTGTTTCTGATTCTGAAATCGCCCAAACAAAACAAAACAAAACAAAACAAAACAAAGAATCCAGGAGGCGGGAGAAGGAGGAGACTTAA 1797 44.52 MTSLYRCRRGKLKMLQKQRYLDRQRITSALLATSAYALPGPLRIPKVPLSSLLPFTSSPIHVHYTSCASLPNPLPLLNFMSIRCICFLPPSPPSSIPWNSNELEDANSTSKFTVKAGYQTLYRVLEACRLSPSNSKTASETHARMIKFGYGNYPTLVTSLVSAYQRADCLNRVHQLLNLLCSKHLDLVAMNLFIDNFMKIGECKLAKRVFDKMPYRDVVTWNSIIGGCVKNARYEEAFKFFRQMLNSNIQPDGFTFASVLNACAQLGAPSNTQWVHALMTQKKIELNSILSCALIDAYSKCGSIQIAKEIFSSVPRSNISSCGKSWIELGGSIQSFKSGDRSHPESDAVYKVVWRLMKRSRSEGYMPVTDLVLMDISEEEKEENLSYHSEKLALAYAILKTSPGAKISISKNLRMCDDCHRWIKLVSTLLCRVVVVRDRIRFHQFEGGMCSCGDRWVALKDKLYILTFGQRNHVWLNEGSITIPPYAPPQEMQAHLMIGGVPVICIDEKDCLHEEGALTFRLPFSLANLELTFTMRAPADEENRMVRRKRKRPLVIGLIASFLPAHLGSAVSDSEIAQTKQNKTKQNKESRRREKEET 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8309400 8313508 + Cp4.1LG18g09360.1 Cpe18g00944 485405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00944 598 Gene3D Tetratricopeptide repeat domain 217 365 IPR011990 GO:0005515
Cpe18g00944 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Cpe18g00944 598 Pfam DYW family of nucleic acid deaminases 364 456 IPR032867 GO:0008270
Cpe18g00944 598 TIGRFAM PPR: pentatricopeptide repeat domain 219 252 IPR002885 -
Cpe18g00944 598 Pfam PPR repeat 293 318 IPR002885 -
Cpe18g00944 598 Pfam PPR repeat family 216 264 IPR002885 -
Cpe18g00944 598 MobiDBLite consensus disorder prediction 582 598 - -
Cpe18g00944 598 Gene3D Tetratricopeptide repeat domain 102 216 IPR011990 GO:0005515
Cpe18g00944 598 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 111 319 - -
Cpe18g00944 598 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 320 439 - -
Cpe18g00944 598 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 111 319 - -
Cpe18g00944 598 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 320 439 - -
Cpe18g00944 598 MobiDBLite consensus disorder prediction 573 598 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00944 - - - cmos:111430093 608.216
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00944 Cpe-Chr18:8309400 Cpe20g00020 Cpe-Chr20:117207 3.40E-42 dispersed
Cpe01g02174 Cpe-Chr1:18547110 Cpe18g00944 Cpe-Chr18:8309400 1.17E-06 transposed
Cpe17g00834 Cpe-Chr17:6477849 Cpe18g00944 Cpe-Chr18:8309400 1.75E-09 transposed
Cpe18g00944 Cpe-Chr18:8309400 Cpe03g00659 Cpe-Chr3:3931034 1.02E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g11 . . Bda06g00704 . . . . Bma12g01100 . . Cma10g00008 . Car10g00005 . . . . . . . . . . . Cla06g01789 . . . . . . . . . . . . . . . . . . Bpe07g00912 . . . . Cmo10g00006 . . . . . . Cpe18g00944 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012825 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00944 Cpe_Chr18 FPKM 0.0 0.0 0.0 0.0 0.978966 0.0 0.746151 0.0 0.0 0.0