Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe19g00038 | ATGGCGTTGTACGACCTAACTCCGCGAATCGCTCCAAATTTGGACCGTCATCTTGTTTTCCCTCTCCTCGAATTCCTTCAAGAGAGGCAGTTTTACCCTGACGAGCAGATCCTCAAGGCCAAAATCGAGCTTCTCAACAGGACCAATATGGTTGATTACGCCATGGACATTCACAAGTCGCTGTATCACACCGACGATGTTCCTCAAGGCATGGCCATCTCTTGGTTTTTTATTTTATTTTACATGGTGGATAGAAGGGTGGAAGTGGTGGCGAGGCTTAAGGCTTTGGAGGAGTCCGCGGCGCCACTTGTTGCTTTTCTGCAGAATCCGGCTGCTGTTCAGGAACTGAGGGCTGATAAGCAGTACAATCTTCAAATGCTTAATGATCGTTATCAGAATTTCTCATCACCGATGAAACAAGTGCAAGGCAGAATATGGTTGATGCATTGGAGCCTCTTCATATTTTTCAATCACGACAATGGAAGAACACAGATAATTGACCTGTTTAATCAAGATAAGTATTTAAATGCCATTCAAACCAATGCTCCCCATCTTTTACGCTATTTGGCCACTGCATTCATTGTTAACAAAAGGCGGCGGCCACAATTCAAAGATTTTATCAAGGTTATTCAGCAGGAACAATATTCCTATAATGATCCCATCACAGAGTTTTTGACTTGTGTGTATGTCAATTATGATTTCGATGGGGCACAAAAGAAGATGAGGGAGTGCGAAGAAGATTTGGATTGCGTCCTTGCTGAAAAGTTGAACTTGAATTATGAGGAAGCTGAGCGGTGGATTGTAAATCTCGTGCGCACGTCAAAGCTTGATGCAAAGCTTGATTCAAAGACAGGAACGGTTATAATGGAAACGAACGAGCCTGACGTGCATGAGCAATTGATCGACCACACGAAGTCATTATCTGGGCGTACTTACAAGTTAGTGACCCAACTTCTAGAGCATGCACAGGCTCAAGCAGCTAGATAA | 987 | 43.67 | MALYDLTPRIAPNLDRHLVFPLLEFLQERQFYPDEQILKAKIELLNRTNMVDYAMDIHKSLYHTDDVPQGMAISWFFILFYMVDRRVEVVARLKALEESAAPLVAFLQNPAAVQELRADKQYNLQMLNDRYQNFSSPMKQVQGRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQYSYNDPITEFLTCVYVNYDFDGAQKKMRECEEDLDCVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDVHEQLIDHTKSLSGRTYKLVTQLLEHAQAQAAR | 328 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 276521 | 280288 | - | Cp4.1LG19g00340.1 | Cpe19g00038 | 485446 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe19g00038 | 328 | Coils | Coil | 234 | 254 | - | - | |
Cpe19g00038 | 328 | SMART | eIF3_N_2 | 5 | 135 | IPR019010 | - | |
Cpe19g00038 | 328 | Coils | Coil | 319 | 328 | - | - | |
Cpe19g00038 | 328 | SUPERFAMILY | Winged helix DNA-binding domain | 252 | 294 | IPR036390 | - | |
Cpe19g00038 | 328 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 132 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
Cpe19g00038 | 328 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 133 | 246 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
Cpe19g00038 | 328 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 251 | 326 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
Cpe19g00038 | 328 | PIRSF | Transl_init_eIF3e | 247 | 328 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
Cpe19g00038 | 328 | PIRSF | Transl_init_eIF3e | 123 | 250 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
Cpe19g00038 | 328 | PIRSF | Transl_init_eIF3e | 1 | 133 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
Cpe19g00038 | 328 | Pfam | PCI domain | 252 | 290 | IPR000717 | - | |
Cpe19g00038 | 328 | Pfam | eIF3 subunit 6 N terminal domain | 5 | 132 | IPR019010 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe10g01213 | Cpe-Chr10:9073351 | Cpe19g00038 | Cpe-Chr19:276521 | 0 | dispersed | |
Cpe19g00037 | Cpe-Chr19:275180 | Cpe19g00038 | Cpe-Chr19:276521 | 6.93E-26 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe19g00038 | K03250 | - | csv:101205199 | 344.739 |