Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00038 ATGGCGTTGTACGACCTAACTCCGCGAATCGCTCCAAATTTGGACCGTCATCTTGTTTTCCCTCTCCTCGAATTCCTTCAAGAGAGGCAGTTTTACCCTGACGAGCAGATCCTCAAGGCCAAAATCGAGCTTCTCAACAGGACCAATATGGTTGATTACGCCATGGACATTCACAAGTCGCTGTATCACACCGACGATGTTCCTCAAGGCATGGCCATCTCTTGGTTTTTTATTTTATTTTACATGGTGGATAGAAGGGTGGAAGTGGTGGCGAGGCTTAAGGCTTTGGAGGAGTCCGCGGCGCCACTTGTTGCTTTTCTGCAGAATCCGGCTGCTGTTCAGGAACTGAGGGCTGATAAGCAGTACAATCTTCAAATGCTTAATGATCGTTATCAGAATTTCTCATCACCGATGAAACAAGTGCAAGGCAGAATATGGTTGATGCATTGGAGCCTCTTCATATTTTTCAATCACGACAATGGAAGAACACAGATAATTGACCTGTTTAATCAAGATAAGTATTTAAATGCCATTCAAACCAATGCTCCCCATCTTTTACGCTATTTGGCCACTGCATTCATTGTTAACAAAAGGCGGCGGCCACAATTCAAAGATTTTATCAAGGTTATTCAGCAGGAACAATATTCCTATAATGATCCCATCACAGAGTTTTTGACTTGTGTGTATGTCAATTATGATTTCGATGGGGCACAAAAGAAGATGAGGGAGTGCGAAGAAGATTTGGATTGCGTCCTTGCTGAAAAGTTGAACTTGAATTATGAGGAAGCTGAGCGGTGGATTGTAAATCTCGTGCGCACGTCAAAGCTTGATGCAAAGCTTGATTCAAAGACAGGAACGGTTATAATGGAAACGAACGAGCCTGACGTGCATGAGCAATTGATCGACCACACGAAGTCATTATCTGGGCGTACTTACAAGTTAGTGACCCAACTTCTAGAGCATGCACAGGCTCAAGCAGCTAGATAA 987 43.67 MALYDLTPRIAPNLDRHLVFPLLEFLQERQFYPDEQILKAKIELLNRTNMVDYAMDIHKSLYHTDDVPQGMAISWFFILFYMVDRRVEVVARLKALEESAAPLVAFLQNPAAVQELRADKQYNLQMLNDRYQNFSSPMKQVQGRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQYSYNDPITEFLTCVYVNYDFDGAQKKMRECEEDLDCVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDVHEQLIDHTKSLSGRTYKLVTQLLEHAQAQAAR 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 276521 280288 - Cp4.1LG19g00340.1 Cpe19g00038 485446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00038 328 Coils Coil 234 254 - -
Cpe19g00038 328 SMART eIF3_N_2 5 135 IPR019010 -
Cpe19g00038 328 Coils Coil 319 328 - -
Cpe19g00038 328 SUPERFAMILY Winged helix DNA-binding domain 252 294 IPR036390 -
Cpe19g00038 328 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 132 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cpe19g00038 328 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 133 246 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cpe19g00038 328 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 251 326 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cpe19g00038 328 PIRSF Transl_init_eIF3e 247 328 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cpe19g00038 328 PIRSF Transl_init_eIF3e 123 250 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cpe19g00038 328 PIRSF Transl_init_eIF3e 1 133 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cpe19g00038 328 Pfam PCI domain 252 290 IPR000717 -
Cpe19g00038 328 Pfam eIF3 subunit 6 N terminal domain 5 132 IPR019010 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g01213 Cpe-Chr10:9073351 Cpe19g00038 Cpe-Chr19:276521 0 dispersed
Cpe19g00037 Cpe-Chr19:275180 Cpe19g00038 Cpe-Chr19:276521 6.93E-26 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00038 K03250 - csv:101205199 344.739