Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00055 ATGGCCTCTTTGTGTTGTTATCTCTTCATTTTTCTTGTTGGGTTTCTTTCAAATTCCCTGTTTCTGGGAGCTGAGCTTGATGATCAAATCATCATGTCCTCCATTAGAGAGGACCTTCAAGTTCTTGGCTGGAGCTCAAACATCTCAGATTACTGTTCTTGGAAAGGTGTTCGTTGTGGTTTGAATCATTCCATGGTTGAATCTCTTGATCTTTCTGGTCACTCTCTTAGAGGTAATCTAACTGTGATTTCTCAGCTCAAGGCTTTGAAATGGCTGGATCTTTCCTTCAATGACTTCCATGGAAAGATTCCGTCGAGTTTTGCTAACTTATTCGAGCTCGAATTCCTCGATTTGTCTTTGAACAAGTTCGATGGCTCGATCCCGCCCGAGCTTGGTGGTTTGAAGAACCTCAAGTCATTGAATCTCTCCAATAATCTTCTGGTGGGAGAGATTCCAGATGAGCTTCAAGGCTTAGAGAATTTGAGGGATTTTCAAGTTTCTAGCAACAGATTGAATGGTTCAATCCCAATGTGGGTTGGGAATTTCACTCATCTTAGAGTTTTTACAGCTTATGAGAATGCATTTGATGGTGTAATCCCTGATAATCTAGGCTTGGTTTCTGAACTTCAAGTGTTGAATCTGCATACTAATAAGCTTGAAGGCCCGATTCCTCGAAGCGTTTTCGCTTCGGGGAAGCTCGAGATTTTGGTTCTAACACAAAACAGATTGAATGGGAATCTTCCTGAAGAGATTGGGAACTGTAAAAGCCTTACTAGCGTTCGAATCGGGAACAACGACCTTGTTGGTGTCGTTCCTCCTGCCATTGGAAATGTTAGTAGCCTTGCTTACTTTGAAGTGAATAACAATCACCTATCGGGCGATATAACATCTCGGATATCGCTGTGCTCTAATCTTACTTTGCTGAATCTAGCCTCGAATGGATTCACCGGGACGATTCCTTCCGAGCTTGGAGAACTGATGAATCTGCAGGAACTTATTCTTTCTGGTAACAATCTGTATGGTGATATTCCAAGATCAATGCTCAAGTGTAAGAATCTCAACAAGCTTGATTTGAGCAACAATAGATTTAATGGTACTATTCCTTCAGATATCTGCAATGTCTCAAGATTGCAATACTTGCTTTTGGAACAGAATTCAATCAAAGGAGAGATACCTAACGAGATCGGAAAATGTACAAAGCTTCTCGACCTCCGACTCGGGAGTAACTACTTAACTGGAAGCATCCCTTCGGAGATCGGTCGGATTAAGAATTTACAGATAGCTTTGAACTTGAGTTTCAACCATCTAAATGGACCAGTGCCTCCTGAGTTGGGGAAGCTTGATAAACTGGTCTCGTTAGATTTGTCGAACAATCATCTCTCGGGCGATATCCCTTCCGAACTCAAGGGCATGTTAAGCTTGATAGAGGTGAATTTTTCGAATAATCTGCTTACTGGTTCGATTCCTTTTTTTGTTCCATTCCAGAAAAGTGCAAATTCTAGTTTTCTAGGGAACGATGGCCTTTGCGGGGCGCCATTAAGCATTTCGTGTAAAAACTCGATCGGGTCATATAATCAAGATTACCATCACAAGGTCTCTTACAAGATCATACTGGCTGTCATCGGTTCCGGGCTGGCAGTCTTCGTATCAGTAACTATAGTTGTTTTACTTTTCGTAATGAAAGAAAAGCAGGAAAAGACAGCTAAATCTTCAGGGACTGCAGATGATGCAACCGTCGACGATCAACCAATTATAATATCAGGAAACGTCTTCGACGATAATCTCCGACAGGAAATCGATCTCGATGCAGTCGTTAAAGCCACGTTGAAGGATTCAAACAAGCTCATCTTTGGCACTTTCAGCACGGTTTACAAGGCGGTTATGCCTTCGGGTATGATCATATCAGTTAAGAGACTAAAATCCATGGATAAGACAATCATTCATCATCAAAGCAAGATGATCAGAGAGCTTGAAAGGCTTGGTAAACTGAGTCATGCTAATCTTTTGCAGCTCATTGGATATATCTCAAAGCTTCTTGATCCATCAAGAGGAACTGCTAGTATTAGTGCAGTGGCTGGTTCATTTGGCTACATTCCACCAGAATATGCGTACACGATGCAAGTTACGGCACCTGGAAACGTTTATAGCTACGGTGTTATCTTGCTTGAGATTCTCACTACCAGGCTTCCAGTCGATGAGGAGTTTGGTGAAGGAGTAGACTTGGTGAAGTGGGTGCACGGTGCTTCGTCGAGAGGCGAAACGCCTGAACAGATACTTGATTCCCAGCTGAGCACGGTGTCGTTTGGATGGAGGAAGGAGATGCTTGCAGCTCTCAAGATTGCATTGCTATGCACTGATAGCATTCCGGCCAAAAGGCCAAAAATGAAGGTGGTGGTGGAAATGCTCATGGAGATCAAGCAAAATTGA 2427 42.65 MASLCCYLFIFLVGFLSNSLFLGAELDDQIIMSSIREDLQVLGWSSNISDYCSWKGVRCGLNHSMVESLDLSGHSLRGNLTVISQLKALKWLDLSFNDFHGKIPSSFANLFELEFLDLSLNKFDGSIPPELGGLKNLKSLNLSNNLLVGEIPDELQGLENLRDFQVSSNRLNGSIPMWVGNFTHLRVFTAYENAFDGVIPDNLGLVSELQVLNLHTNKLEGPIPRSVFASGKLEILVLTQNRLNGNLPEEIGNCKSLTSVRIGNNDLVGVVPPAIGNVSSLAYFEVNNNHLSGDITSRISLCSNLTLLNLASNGFTGTIPSELGELMNLQELILSGNNLYGDIPRSMLKCKNLNKLDLSNNRFNGTIPSDICNVSRLQYLLLEQNSIKGEIPNEIGKCTKLLDLRLGSNYLTGSIPSEIGRIKNLQIALNLSFNHLNGPVPPELGKLDKLVSLDLSNNHLSGDIPSELKGMLSLIEVNFSNNLLTGSIPFFVPFQKSANSSFLGNDGLCGAPLSISCKNSIGSYNQDYHHKVSYKIILAVIGSGLAVFVSVTIVVLLFVMKEKQEKTAKSSGTADDATVDDQPIIISGNVFDDNLRQEIDLDAVVKATLKDSNKLIFGTFSTVYKAVMPSGMIISVKRLKSMDKTIIHHQSKMIRELERLGKLSHANLLQLIGYISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVILLEILTTRLPVDEEFGEGVDLVKWVHGASSRGETPEQILDSQLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKVVVEMLMEIKQN 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 431580 434666 + Cp4.1LG19g00540.1 Cpe19g00055 485463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00055 808 Gene3D Phosphorylase Kinase; domain 1 579 675 - -
Cpe19g00055 808 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 675 806 - -
Cpe19g00055 808 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 8 675 - -
Cpe19g00055 808 Gene3D Ribonuclease Inhibitor 31 134 IPR032675 -
Cpe19g00055 808 SUPERFAMILY L domain-like 50 247 - -
Cpe19g00055 808 SMART LRR_typ_2 110 133 IPR003591 -
Cpe19g00055 808 SMART LRR_typ_2 447 470 IPR003591 -
Cpe19g00055 808 SMART LRR_typ_2 206 230 IPR003591 -
Cpe19g00055 808 SMART LRR_typ_2 86 109 IPR003591 -
Cpe19g00055 808 SMART LRR_typ_2 134 157 IPR003591 -
Cpe19g00055 808 SMART LRR_typ_2 374 398 IPR003591 -
Cpe19g00055 808 SMART LRR_typ_2 326 350 IPR003591 -
Cpe19g00055 808 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 675 806 - -
Cpe19g00055 808 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 675 - -
Cpe19g00055 808 Gene3D Ribonuclease Inhibitor 232 520 IPR032675 -
Cpe19g00055 808 Pfam Leucine rich repeat 328 387 IPR001611 GO:0005515
Cpe19g00055 808 Pfam Leucine rich repeat 132 171 IPR001611 GO:0005515
Cpe19g00055 808 SUPERFAMILY Protein kinase-like (PK-like) 611 805 IPR011009 -
Cpe19g00055 808 Pfam Leucine Rich Repeat 449 470 IPR001611 GO:0005515
Cpe19g00055 808 Pfam Leucine Rich Repeat 89 110 IPR001611 GO:0005515
Cpe19g00055 808 Gene3D Ribonuclease Inhibitor 153 231 IPR032675 -
Cpe19g00055 808 Gene3D Transferase(Phosphotransferase) domain 1 676 808 - -
Cpe19g00055 808 PRINTS Leucine-rich repeat signature 353 366 - -
Cpe19g00055 808 PRINTS Leucine-rich repeat signature 447 460 - -
Cpe19g00055 808 SUPERFAMILY RNI-like 194 489 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00055 Cpe-Chr19:431580 Cpe04g01569 Cpe-Chr4:12287161 9.84E-24 dispersed
Cpe10g01188 Cpe-Chr10:8803633 Cpe19g00055 Cpe-Chr19:431580 1.52E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00055 - - csv:101215786 1174.84