Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00058 ATGGGAACTCCGGAATTCCCTAATCTTGGAAAGCATTGCAGCTTTGAAGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGTTGTCACCAGGTCTTCTGTTTGGAGCATCGTAGCTACAATAGGCATAGTTGTCCAAAAACTGATAGGCGTGATGTTACTGTTGTCATTTGTCCGCTCTGTGCCAAAGGAGTTCGTCTCATTCCCGATCAAGACCCGAACATTACGTGGGAGATTCACGTAAACACTGAATGTGATCCTTCAAATTATGATAAAGTCACAAAGAAGAAAAAGTGCCCAGTACCTGGCTGCAGGGAGTTGTTAACGTTTTCAAACACGATCAAGTGCCGGGATTGCTTGGTAGACCATTGTTTGAAGCACCGTTTTGGACCCGACCATAAGTGTTCGGGACCGAAAAAACCAGAACCAGCTGGTTTTCCATTTGTTGGTCTTCTAAGTCGAGGTAGAAAAGAAGAGAAAGGCCCTAAGAAAGCATTGCCCCCCACAACATCTTCCTCTAGTTGGACTACATCCCTCTTTAATGCAGCCTCATCTGTTAAAGCCTCAGCCGAGGCGAGCATGACGAAGTTGTCGAATGAAATCAATCACGCTTGGAAAACAAAAAGCAGCAGCAGCAGCAGCAACGGAAGTGCAAATGGACAAGTCGAGCAATGTCCACAATGTGGTGCTAAGTTTTCGTCAGTTTCATCGTTAATAGACCATGTCGAAAAAGTCCACGAAAAGGGTGGCAATCGACCTGGGGCGAAGAAGGTAGTAATCGATGCTTGTCCGAAGTGTAGTAGAGGATTTGTTGATCCTGTTGCGCTCGTGGAGCATATCGAGAGGGAGCATGGTGGTACTTCAAGAGCTTGA 879 45.85 MGTPEFPNLGKHCSFEDCKQIDFLPFTCDCCHQVFCLEHRSYNRHSCPKTDRRDVTVVICPLCAKGVRLIPDQDPNITWEIHVNTECDPSNYDKVTKKKKCPVPGCRELLTFSNTIKCRDCLVDHCLKHRFGPDHKCSGPKKPEPAGFPFVGLLSRGRKEEKGPKKALPPTTSSSSWTTSLFNAASSVKASAEASMTKLSNEINHAWKTKSSSSSSNGSANGQVEQCPQCGAKFSSVSSLIDHVEKVHEKGGNRPGAKKVVIDACPKCSRGFVDPVALVEHIEREHGGTSRA 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 441424 443972 - Cp4.1LG19g00560.1 Cpe19g00058 485466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00058 292 MobiDBLite consensus disorder prediction 157 176 - -
Cpe19g00058 292 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Cpe19g00058 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 291 IPR013087 -
Cpe19g00058 292 ProSitePatterns Zinc finger C2H2 type domain signature. 227 248 IPR013087 -
Cpe19g00058 292 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Cpe19g00058 292 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Cpe19g00058 292 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Cpe19g00058 292 Gene3D Classic Zinc Finger 189 291 - -
Cpe19g00058 292 Gene3D - 81 147 IPR035896 -
Cpe19g00058 292 SMART c2h2final6 263 286 IPR013087 -
Cpe19g00058 292 SMART c2h2final6 225 248 IPR013087 -
Cpe19g00058 292 SMART c2h2final6 99 129 IPR013087 -
Cpe19g00058 292 Pfam C2H2-type zinc finger 226 248 - -
Cpe19g00058 292 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Cpe19g00058 292 Gene3D - 2 58 IPR035896 -
Cpe19g00058 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 248 IPR013087 -
Cpe19g00058 292 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 292 - -
Cpe19g00058 292 ProSitePatterns Zinc finger C2H2 type domain signature. 265 286 IPR013087 -
Cpe19g00058 292 Pfam AN1-like Zinc finger 13 50 IPR000058 GO:0008270
Cpe19g00058 292 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Cpe19g00058 292 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 292 - -
Cpe19g00058 292 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00546 Cpe-Chr3:3199642 Cpe19g00058 Cpe-Chr19:441424 2.50E-31 transposed
Cpe10g01185 Cpe-Chr10:8789436 Cpe19g00058 Cpe-Chr19:441424 1.28E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50948 PF01428 zf-AN1 1.50E-07 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00058 - - cmax:111466071 593.578