Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00060 ATGGAGGTCGACGCTAATTCAGGGAAATCGTCGAAACAGATTGGGAGTGGTCAGGTTTGTCAGATCTGTAGCGATTCCGTCGGCACCACGGCCGATGGCGAGCCGTTTGTTGCGTGTGATGTTTGTGCATTTCCGGTTTGCCGTCCTTGTTACGAGTACGAGAGAAAAGATGGGAATCAGTCTTGCCCTCAGTGCAAGACCAAATACAAGTGGCATAAAGGAAGTCCTCCGGTTAATGGAGAAGCAGTGGAAGATGGGGATGGTACTGGAGTGACAGGGGCTCAAGAAAGGCACCATAAGTTACCTGAGCGCACTCTTAGCTGGGATACCAACTATGATAAGGAGGGATCCTTTAATCATATTCCTTTGCTTACCACTGGACGATCTGTTTCTGGAGAACTATCAGCTGCATCTCCCGAGCGGCTCTCCATGGCGTCTCCTGAAAGTGGGAGCAGGGCTAACTATAGAATCATGGATCAATCGAGAGATTCGGGATCGGCTAGGTTTGGCAATGTGGCTTGGAAAGAGAGAATTGATAGTTGGAAGGTGAAGCAGGACAAGAGTGTGCCGCCAATGAGTGTTAGTCATGCACCTTCTGAAGGTCGGGGTGGTGCAGATTTCGATGCCAGCACTGATGTCATGATCGATGATTCTTTACTAAACGATGAAGCCCGTCAGCCTCTTTCGAGGAAGGTTTCTATTCCGTCCTCTAGGATTAACCCTTATAGGATGGTCATAGTTCTGCGACTTGTAATTCTTTGCATCTTCTTGCACTACCGGATTACAAATCCAGTTCCGAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAAATATGGTTTGCTGTATCTTGGATTTTGGATCAGTTCCCCAAATGGCTTCCAGTCAATCGCGAGACATATCTTGATCGACTTGCTCTACGATATGATCGTGAAGGAGAGCCATCCCAGTTGGCTGCTGTTGACATATTTGTCAGTACTGTCGACCCTCTGAAAGAGCCTCCCCTTGTCACAGCTAATACGGTCCTATCAATTCTCGCTGTGGACTATCCAGTCGATAAAGTTTCTTGCTATGTATCAGATGATGGAGCTGCTATGTTAACATTTGAAGCATTGTCTGAAACGTCAGAGTTTGCAAGAAAATGGGTTCCTTTCTGCAAGAAATACAGCATTGAGCCACGAGCACCAGAGTGGTATTTTGCTCAGAAGATCGATTACTTAAAGGACAAGGTTCACCCATCGTTTGTGAAGGAGCGGCGAGCAATGAAGAGAGAATATGAGGAGTTTAAAATTCGTGTCAATGGACTTGTTGCTAAGGCACAGAAAGTTCCTGATGAAGGGTGGGTCATGCAAGATGGTACACCATGGCCTGGAAACAACACTAGAGATCATCCAGGAATGATTCAGGTTTTCTTAGGGCACAGTGGAGGACTTGATACTGAGGGTAATGAGCTTCCTCGTTTAGTTTATGTTTCTCGTGAGAAGCGTCCTGGTTTCCAACATCACAAAAAGGCTGGTGCTATGAATGCACTTGTTCGTGTTTCTGCTGTTCTTACCAATGGGCCTTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCGTTACGGGAAGCTATGTGCTTTATGATGGATCCTAATCTTGGAAAATCAGTGTGCTACGTTCAGTTTCCTCAGAGGTTTGATGGGATTGATAGAAACGATCGATACGCCAATCGTAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGCATCCAAGGTCCGGTTTATGTGGGAACGGGATGTGTCTTCAATCGAACTGCATTGTACGGCTATGAACCCCCCCTCAAGCCTAAGCACAAAAAACCCGGGGTCTTCTCCAGTTGCTTTGGGAAATCAAAAAAGAAAAGTTCTAAATCAAAAAGGAAGGATTCTGATAAAAAGCAATCAAATAAAAACGTTGATCCGACTGTGCCAATATTCAACCTCGAGGATATCGAGGAAGGTGTCGAAGGTGCTGGATTTGACGATGAGAAGTCGCTACTAATGTCACAAATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCTGTATTTGTTGCTTCCACACTGATGGAGAACGGTGGCGTGCCGCAGTCTGCCACCCCGGAATCTCTTCTTAAGGAAGCAATTCACGTCATCAGTTGCGGATACGAGGATAAAACAGACTGGGGAAGTGAAATTGGATGGATCTATGGTTCTGTCACAGAAGATATTTTGACAGGGTTCAAGATGCACGCCCGTGGTTGGAGATCGATCTATTGCATACCTGACCGTCCTGCATTTAAAGGTTCTGCTCCTATTAATCTTTCCGATCGTCTAAACCAAGTGCTTCGATGGGCGTTAGGTTCGGTTGAAATTCTTTTCAGTCGGCATTGCCCGATGTGGTACGGTTATAGTGGACGCCTGAAATGGCTCGAGAGATTTGCTTATGTTAACACCACCATTTACCCAATTACATCCATTCCTCTCCTTGCCTATTGTACCTTGCCTGCAATATGTCTGCTCACCGGAAAGTTCATCATTCCTCAGATTAGTAATCTTGCCAGTATTTGGTTCATTTCTCTCTTTCTTTCTATCTTTGCCACTGGTATTCTGGAAATGAGATGGAGTGGCGTCGGAATCGATGAATGGTGGAGAAACGAGCAGTTTTGGGTTATCGGAGGTGTGTCGGCCCATTTGTTTGCCGTGTTCCAAGGTCTGCTTAAAGTTCTTGCTGGAATTGATACGAACTTCACGGTTACTTCGAAAGCATCCGACGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAATGGACCACTCTTCTCATTCCCCCAACTACTCTCCTCATTATCAACATAGTTGGAGTTGTTGCTGGAATTTCTTACGCCATTAACAGTGGCTATCAATCTTGGGGTCCCCTTTTCGGCAAGCTGTTCTTCGCTTTCTGGGTGATTATCCATCTGTATCCCTTCCTCAAGGGTCTGATGGGTCGCCAGAACCGAACTCCAACGATCGTGGTTGTATGGTCCATCCTCCTTGCCTCAATCTTCTCCCTTTTATGGGTTCGGATTGATCCCTTCACAACCCGAGTAACTGGCCCCGACGTCGAACAGTGTGGAATCAACTGCTAA 3153 45.73 MEVDANSGKSSKQIGSGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVNGEAVEDGDGTGVTGAQERHHKLPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVMIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVPNAFALWLISVICEIWFAVSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKERRAMKREYEEFKIRVNGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGVFSSCFGKSKKKSSKSKRKDSDKKQSNKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYSGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 447906 453295 - Cp4.1LG19g00610.1 Cpe19g00060 485468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00060 1050 Pfam Zinc-binding RING-finger 16 86 IPR027934 -
Cpe19g00060 1050 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 440 613 IPR029044 -
Cpe19g00060 1050 PANTHER CELLULOSE SYNTHASE 11 1050 - -
Cpe19g00060 1050 MobiDBLite consensus disorder prediction 623 656 - -
Cpe19g00060 1050 Pfam Cellulose synthase 322 1043 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cpe19g00060 1050 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Cpe19g00060 1050 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 11 1050 - -
Cpe19g00060 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 92 IPR013083 -
Cpe19g00060 1050 MobiDBLite consensus disorder prediction 76 99 - -
Cpe19g00060 1050 CDD mRING-HC-C4C4_CesA_plant 18 68 - -
Cpe19g00060 1050 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 860 IPR029044 -
Cpe19g00060 1050 SUPERFAMILY RING/U-box 8 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00458 Cpe-Chr2:2585423 Cpe19g00060 Cpe-Chr19:447906 2.88E-86 dispersed
Cpe06g00347 Cpe-Chr6:1929692 Cpe19g00060 Cpe-Chr19:447906 0 dispersed
Cpe10g00358 Cpe-Chr10:2114592 Cpe19g00060 Cpe-Chr19:447906 0 dispersed
Cpe18g00576 Cpe-Chr18:6213170 Cpe19g00060 Cpe-Chr19:447906 0 dispersed
Cpe20g00474 Cpe-Chr20:2736791 Cpe19g00060 Cpe-Chr19:447906 0 dispersed
Cpe17g00688 Cpe-Chr17:5498729 Cpe19g00060 Cpe-Chr19:447906 0 transposed
Cpe10g01182 Cpe-Chr10:8775512 Cpe19g00060 Cpe-Chr19:447906 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00060 K10999 - csv:101211779 2097.78