Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe19g00081 | ATGGCTGACCCATACTCCAATTCATTAGCTAGTCTTCTAAAATTCAGCTCCCTCCATCACCATTTCCCACAATCACAACCTTCCCCATCTCCCTCACACCTCAATATGTCCCTCAATTGCCTTCCATATCCCTACCTGGGTTCGGGTTCGGGTTCGGGTTCAGGTTCAGGGTCAGGGTCAGGTTCGCCTCCGCCTTCGTCGCCACCGCTCCGCGAGGCTCTACCGCTTCTCGGGTTGATATCTCCCCCCGAGCAACGGCAGGAGCAAGAGGAAGAAGACTATGGCGGGGACGACGAGGGCAACGATGAGTCGGTGACCGTGGCACTCCACATAGGGCTACCTAGCCCTAGCACAGTGGAGATGGGTTCATCTGAGATTGATCATAGTAATAATAATGATAATCTTGATGATTTTGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTACTCAAATCCTCATTGGTCCTACACAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAATATGCAGATGCACATGTGGGGGCACGGCTCTCAGTACAGAAAAGGCCCAGAATCCCTGCGAGGCACGCAGCCAACGGGCATGCTAAGGCTGCCTTGCTACTGCTGCGCGCCAGGGTGCCGCAACAACATCGACCACCCTCGAGCCAAGCCACTCAAAGACTTTAGAACTCTTCAAACACACTACAAGCGCAAGCACGGGCTCAAGCCATTCACGTGCCGCAAGTGCGGTAAGGCGTTTGCCGTGCGAGGGGACTGGCGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGCTCGGATTTCAAGCACAAGCGCTCGCTCAAGGACCATGTCAAGGCCTTCGGTAACGACCACGCCGCCTATGGTGTTGGCGGGGTCGACGGGTTCGGAGACGAGGAGGAGGACGACCCCGCTTCGGAAGTCGAGCAGGATAACAACGAGTGA | 990 | 53.84 | MADPYSNSLASLLKFSSLHHHFPQSQPSPSPSHLNMSLNCLPYPYLGSGSGSGSGSGSGSGSPPPSSPPLREALPLLGLISPPEQRQEQEEEDYGGDDEGNDESVTVALHIGLPSPSTVEMGSSEIDHSNNNDNLDDFGQSTKTLIKGQYWIPTPTQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFTCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGVGGVDGFGDEEEDDPASEVEQDNNE | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 598309 | 600043 | + | Cp4.1LG19g00820.1 | Cpe19g00081 | 485489 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe19g00081 | 329 | MobiDBLite | consensus disorder prediction | 307 | 329 | - | - | |
Cpe19g00081 | 329 | MobiDBLite | consensus disorder prediction | 310 | 329 | - | - | |
Cpe19g00081 | 329 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 167 | 187 | IPR013087 | - | |
Cpe19g00081 | 329 | Gene3D | Classic Zinc Finger | 212 | 302 | - | - | |
Cpe19g00081 | 329 | SUPERFAMILY | beta-beta-alpha zinc fingers | 234 | 269 | IPR036236 | - | |
Cpe19g00081 | 329 | MobiDBLite | consensus disorder prediction | 20 | 37 | - | - | |
Cpe19g00081 | 329 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 165 | 192 | IPR013087 | - | |
Cpe19g00081 | 329 | SUPERFAMILY | beta-beta-alpha zinc fingers | 160 | 187 | IPR036236 | - | |
Cpe19g00081 | 329 | MobiDBLite | consensus disorder prediction | 20 | 102 | - | - | |
Cpe19g00081 | 329 | PANTHER | ZINC FINGER PROTEIN WIP2 | 14 | 328 | IPR043584 | GO:0003700|GO:0010468 | |
Cpe19g00081 | 329 | Gene3D | Classic Zinc Finger | 164 | 187 | - | - | |
Cpe19g00081 | 329 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 249 | 269 | IPR013087 | - | |
Cpe19g00081 | 329 | PANTHER | ZINC FINGER PROTEIN WIP2-LIKE | 14 | 328 | - | - | |
Cpe19g00081 | 329 | SMART | c2h2final6 | 249 | 269 | IPR013087 | - | |
Cpe19g00081 | 329 | SMART | c2h2final6 | 165 | 187 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe12g00821 | Cpe-Chr12:7326664 | Cpe19g00081 | Cpe-Chr19:598309 | 4.27E-108 | dispersed | |
Cpe16g00887 | Cpe-Chr16:8355545 | Cpe19g00081 | Cpe-Chr19:598309 | 7.69E-127 | dispersed | |
Cpe17g00682 | Cpe-Chr17:5457674 | Cpe19g00081 | Cpe-Chr19:598309 | 4.77E-105 | dispersed | |
Cpe19g00081 | Cpe-Chr19:598309 | Cpe20g00697 | Cpe-Chr20:5474374 | 1.02E-103 | dispersed | |
Cpe10g01159 | Cpe-Chr10:8500987 | Cpe19g00081 | Cpe-Chr19:598309 | 1.44E-152 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50949 | None | None | None | None | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe19g00081 | - | - | bhj:120074233 | 496.893 |