Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00081 ATGGCTGACCCATACTCCAATTCATTAGCTAGTCTTCTAAAATTCAGCTCCCTCCATCACCATTTCCCACAATCACAACCTTCCCCATCTCCCTCACACCTCAATATGTCCCTCAATTGCCTTCCATATCCCTACCTGGGTTCGGGTTCGGGTTCGGGTTCAGGTTCAGGGTCAGGGTCAGGTTCGCCTCCGCCTTCGTCGCCACCGCTCCGCGAGGCTCTACCGCTTCTCGGGTTGATATCTCCCCCCGAGCAACGGCAGGAGCAAGAGGAAGAAGACTATGGCGGGGACGACGAGGGCAACGATGAGTCGGTGACCGTGGCACTCCACATAGGGCTACCTAGCCCTAGCACAGTGGAGATGGGTTCATCTGAGATTGATCATAGTAATAATAATGATAATCTTGATGATTTTGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTACTCAAATCCTCATTGGTCCTACACAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAATATGCAGATGCACATGTGGGGGCACGGCTCTCAGTACAGAAAAGGCCCAGAATCCCTGCGAGGCACGCAGCCAACGGGCATGCTAAGGCTGCCTTGCTACTGCTGCGCGCCAGGGTGCCGCAACAACATCGACCACCCTCGAGCCAAGCCACTCAAAGACTTTAGAACTCTTCAAACACACTACAAGCGCAAGCACGGGCTCAAGCCATTCACGTGCCGCAAGTGCGGTAAGGCGTTTGCCGTGCGAGGGGACTGGCGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGCTCGGATTTCAAGCACAAGCGCTCGCTCAAGGACCATGTCAAGGCCTTCGGTAACGACCACGCCGCCTATGGTGTTGGCGGGGTCGACGGGTTCGGAGACGAGGAGGAGGACGACCCCGCTTCGGAAGTCGAGCAGGATAACAACGAGTGA 990 53.84 MADPYSNSLASLLKFSSLHHHFPQSQPSPSPSHLNMSLNCLPYPYLGSGSGSGSGSGSGSGSPPPSSPPLREALPLLGLISPPEQRQEQEEEDYGGDDEGNDESVTVALHIGLPSPSTVEMGSSEIDHSNNNDNLDDFGQSTKTLIKGQYWIPTPTQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFTCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGVGGVDGFGDEEEDDPASEVEQDNNE 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 598309 600043 + Cp4.1LG19g00820.1 Cpe19g00081 485489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00081 329 MobiDBLite consensus disorder prediction 307 329 - -
Cpe19g00081 329 MobiDBLite consensus disorder prediction 310 329 - -
Cpe19g00081 329 ProSitePatterns Zinc finger C2H2 type domain signature. 167 187 IPR013087 -
Cpe19g00081 329 Gene3D Classic Zinc Finger 212 302 - -
Cpe19g00081 329 SUPERFAMILY beta-beta-alpha zinc fingers 234 269 IPR036236 -
Cpe19g00081 329 MobiDBLite consensus disorder prediction 20 37 - -
Cpe19g00081 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 192 IPR013087 -
Cpe19g00081 329 SUPERFAMILY beta-beta-alpha zinc fingers 160 187 IPR036236 -
Cpe19g00081 329 MobiDBLite consensus disorder prediction 20 102 - -
Cpe19g00081 329 PANTHER ZINC FINGER PROTEIN WIP2 14 328 IPR043584 GO:0003700|GO:0010468
Cpe19g00081 329 Gene3D Classic Zinc Finger 164 187 - -
Cpe19g00081 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 269 IPR013087 -
Cpe19g00081 329 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 14 328 - -
Cpe19g00081 329 SMART c2h2final6 249 269 IPR013087 -
Cpe19g00081 329 SMART c2h2final6 165 187 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00821 Cpe-Chr12:7326664 Cpe19g00081 Cpe-Chr19:598309 4.27E-108 dispersed
Cpe16g00887 Cpe-Chr16:8355545 Cpe19g00081 Cpe-Chr19:598309 7.69E-127 dispersed
Cpe17g00682 Cpe-Chr17:5457674 Cpe19g00081 Cpe-Chr19:598309 4.77E-105 dispersed
Cpe19g00081 Cpe-Chr19:598309 Cpe20g00697 Cpe-Chr20:5474374 1.02E-103 dispersed
Cpe10g01159 Cpe-Chr10:8500987 Cpe19g00081 Cpe-Chr19:598309 1.44E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50949 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00081 - - bhj:120074233 496.893