Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00084 ATGGCTCCTGGAAGCAGTACCTGCAAAAAAGTAGATTCTCACCCTTCAGTTTCTGGTCATGACATAGCAATATCTAAATCAGAGAATAATCCTACAACATCAAAAGCCTCACTTGGTTTGGGTGGGAAACTTGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTAGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCGAATGGCCACACATTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTCTTGCCCAACCTGTCGTCACGAACTCGGAAATATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTGGAAATCCCTTGCAGATACCAGAACTTGGGTTGTCAAGACATTTTTCCTTACTACAGTAAGCTTAAGCACGAACAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCGGTCACGGGTGACATCCAGTCTCTTGTTGCTCATCTCAAAGATGATCACAAGGTTGACATGCATGATGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACATGAAGTCGAAAACGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAGGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGAATGGCACCTGTTTACATGGCGTTCTTACGATTCATGGGTGACGATAATGAAGCGAAGAAGTTCAGCTACAGTTTGGAAGTCGGTGGCAACGGGCGAAAACTGATATGGCAAGGAATTCCAAGGGGCATCCGCGACAGTCACCGAAAAGTTCGTGACAGTCAAGACGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCAGGAGGGGAAAGGCAAGAGCTGAAGCTGAGAATCACAGGCCGAATATGGAAGGAAGAATAA 921 45.82 MAPGSSTCKKVDSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 653947 658924 + Cp4.1LG19g00830.1 Cpe19g00084 485492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00084 306 CDD RING-HC_SIAHs 56 94 - -
Cpe19g00084 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 1 306 - -
Cpe19g00084 306 SUPERFAMILY TRAF domain-like 111 303 - -
Cpe19g00084 306 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 299 IPR008974 GO:0005515
Cpe19g00084 306 Pfam Seven in absentia protein family 100 299 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cpe19g00084 306 MobiDBLite consensus disorder prediction 20 34 - -
Cpe19g00084 306 CDD Sina 172 300 - -
Cpe19g00084 306 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 306 - -
Cpe19g00084 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 110 IPR013083 -
Cpe19g00084 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 164 IPR013083 -
Cpe19g00084 306 SUPERFAMILY RING/U-box 52 99 - -
Cpe19g00084 306 MobiDBLite consensus disorder prediction 1 34 - -
Cpe19g00084 306 ProSiteProfiles Zinc finger RING-type profile. 58 94 IPR001841 -
Cpe19g00084 306 ProSiteProfiles Zinc finger SIAH-type profile. 111 171 IPR013010 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g01016 Cpe-Chr17:7696655 Cpe19g00084 Cpe-Chr19:653947 3.68E-153 dispersed
Cpe19g00084 Cpe-Chr19:653947 Cpe09g00015 Cpe-Chr9:86520 6.48E-153 dispersed
Cpe10g01153 Cpe-Chr10:8364181 Cpe19g00084 Cpe-Chr19:653947 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00084 K04506 - cpap:110811721 571.622