Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00086 ATGGGAGACAACAATAACACCAACAGAGGCCTTGTTTCGGCCAACGCCGCCGCTAATTCCAACCGGAACAACAACGGCAGCCACCACAAGAAGCCGGAGTGGCTGCAGCAGTACGATCTAATTGGGAAGATCGGAGAGGGTACCTATGGCCTTGTGTTCCTTGCTAAAATCAAACCCCCTTCGCCCAGTCGCGGTAAGTCCATTGCCATCAAGAAGTTCAAGCAATCCAAGGACGGTGATGGCGTCTCCCCAACTGCCATCCGCGAAATTATGTTACTGCGGGAAATAACACACGAGAATGTCGTCAAGCTTGTAAATGTTCATATCAATCATACAGATATGTCGCTGTATCTAGCTTTCGATTATGCTGAACATGACCTTTATGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTACACCGTTAAATCTTTGCTTTGGCAACTTCTCAATGGATTGAACTATCTCCACAGTAATTGGATCATTCATCGTGATTTAAAGCCATCGAATATTTTGGTAATGGGTGAAGGAGAAGAACAAGGATTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTCGTCACCATTTGGTATCGTGCACCTGAACTTCTCCTTGGAGCAAAACACTATACTAGTGCTGTTGATATGTGGGCTGTTGGATGTATTTTTGCTGAGCTCTTGACACTGAAGCCATTGTTTCAAGGGCAAGAAGTCAAAGGGAATCCAAATCCTTTCCAGCTTGATCAACTCGACAAGATATTTAAGGTTTTAGGCCATCCCACGGTAGAGAAGTGGCCAACACTTGCTAATCTTCCACATTGGCAACAAGATTTACAGCATATACAGGGACATAAATATGACACTGCTGGATTGTTTAATGTTGTGCACCTTTCTCCAAAAAGTCCTGCGTATGATCTTCTATCCAAAATGCTTGAGTATGATCCTCGAAAGCGTATAACAGCAGCCCAAGCTCTTGAGCATGAGTATTTTCGATTAGAACCACTGCCAGGATACAATGCTCTAGTACCAATTCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGCCCTGTGGACACAACCACGGATTTTGAGGGAACAACTAGCCTTCAGCCCCCACAAACGGCGTCTGGAAATGCTGTAAACATGCAAGGTGCTCATGCTGTGGCAGGCAGATCTGTCCCTCGGCCGATGATAGGAGTTGGCATGCCAAGGATGCCGCCTCAGGGCATGGGTCCTTATAACCTTGCATCTCAGGCTGGGATGGGCATGAATCCTGGTGGCATCCCTATGCAGCGTGGTGTTTCTGCTCAAGCTCATCAGCAACAACAGGTTGTTAAGGAGAAAAGATCCAGGAATGGGAATGCCAGGCTATCCTCCACAGCAGAAACAACAAAGACGCTACTGAGTGGTATCAGGAAGATCAGAAATTACTTGTACGCTTCGTCAAAATTTGTCCACGCCATCTTACAAAGCCAAGTATCGATTGATGTTAATACATCTCTCAACTTGCTTGCCTGCTCGGTTGCTGCACAGATCAAATGGGAGAAGGCAAGAATTGCTCCCGGGCATCAGTTTTCTTGA 1641 45.52 MGDNNNTNRGLVSANAAANSNRNNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHTDMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGLVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGNPNPFQLDQLDKIFKVLGHPTVEKWPTLANLPHWQQDLQHIQGHKYDTAGLFNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNALVPIQPGEKVINYPTRPVDTTTDFEGTTSLQPPQTASGNAVNMQGAHAVAGRSVPRPMIGVGMPRMPPQGMGPYNLASQAGMGMNPGGIPMQRGVSAQAHQQQQVVKEKRSRNGNARLSSTAETTKTLLSGIRKIRNYLYASSKFVHAILQSQVSIDVNTSLNLLACSVAAQIKWEKARIAPGHQFS 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 665359 675610 - Cp4.1LG19g00860.1 Cpe19g00086 485494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00086 546 SUPERFAMILY Protein kinase-like (PK-like) 33 350 IPR011009 -
Cpe19g00086 546 SMART serkin_6 38 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00086 546 Gene3D Phosphorylase Kinase; domain 1 17 120 - -
Cpe19g00086 546 ProSiteProfiles Protein kinase domain profile. 38 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00086 546 Gene3D Transferase(Phosphotransferase) domain 1 121 360 - -
Cpe19g00086 546 Pfam Protein kinase domain 38 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00086 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cpe19g00086 546 ProSitePatterns Protein kinases ATP-binding region signature. 44 72 IPR017441 GO:0005524
Cpe19g00086 546 CDD STKc_CDK8_like 37 349 - -
Cpe19g00086 546 PANTHER CELL DIVISION PROTEIN KINASE 26 469 - -
Cpe19g00086 546 PANTHER CYCLIN-DEPENDENT KINASE E-1 26 469 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00086 Cpe-Chr19:665359 Cpe01g01276 Cpe-Chr1:7675157 1.07E-75 dispersed
Cpe19g00086 Cpe-Chr19:665359 Cpe11g00061 Cpe-Chr11:324146 3.34E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63015 PF00069 Pkinase 3.40E-68 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00086 K02208 - csv:101203984 846.654