Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00087 ATGTGGTCTAAGTCCGATAATAAACCGGACGGATCTGAGATGTTTAGCAACTCATCAAAGGGGGAAAACGATTGTCACGGAGGAATGAACGTAAACGCACCAAATTTCGTGAAAAATCCTCCGGATTCTCTCAGAAGAATCGATCAAATCGCCAAAAACGGCATAAATTCCGGGAATCAGACGGCGACGATGAACCACGAGTTTCATTCCGGGCAGGCAGGGGGGTCGATTGCGCCGATTCCGAGCGGTGCACCTGCAACAAACATGAAGAACATCAACAATAACAACAACTCTACTTTCTTTCCGACGAAGAGCGGCAGCGATGGCATGGAGACGCTAGGAATGGTGATTAAACCGCACACAGGCGGGGATGTGCGATGGGACGCTGTGAACATGGTGTCGAAAGGAGGCCAGTTGAATCTGAGCCATTTCAGGCTTCTGAAGCGGCTTGGTTATGGCGATATCGGAAGTGTTTATCTGGTGGAATTGAGAGGAACTGATACGTTTTTCGCCATGAAAGTTATGGACAAAGCTTCATTGGCGAGTCGGAATAAGGTTGTTAGGGCACAGACGGAGAGGGAGATTTTAGGGCTTTTGGATCATCCATTTTTGCCGACTCTGTATTCCTATTTCGAAACTGATAAGTTCTATTGCTTGGTTATGGAGTTTTGTAGCGGCGGAAATCTTCATTCTCTTCGTCAGAAACAACCTAACAAGTATTTCACAGAAGAAGCTGCCAGATTCTATGCATCAGAAGTTCTATTAGCACTCGAATATCTTCACATGTTAGGAATAGTTTACAGAGATTTGAAACCAGAGAACCTGTTAATCCGAGACGAAGGTCACATCATGCTCTCCGATTTCGACCTCTCTCTCCGCTGCTCCGTCAGCCCTACTCTCGTCAAATCCTCCTCCGTCAATGTCAATGGCAGCTCCACCACCGGACACGCCGGCACCAACGGTGGCGGCAGCGGCAGCGGCGGTATCCTCGACGACGAGTTCGCCGTCCATGGATGTATGCAGCCTTCCAACTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAATCGCAAGTCGAAATCCGACTTCGGCCTCTTCGTCGGCGGAGCATTGCCGGAACTCATGGCGGAGCCGACGAATGTTAGATCGATGTCGTTCGTCGGCACGCACGAGTATTTAGCGCCGGAGATCATCCAAGGCGAAGGCCATGGCAGCGCCGTCGACTGGTGGACATTTGGAATCTTCCTCTACGAGCTTCTTCACGGAACAACGCCGTTTAAAGGATCTGGAAATAGAGCTACTCTGTTTAATGTTGTCGGACAGCCGCTTAGATTCCCGGAGACGCCGCAGGTGAGTCTACAGGCGAGGGATCTGATCAGAGGCCTTCTTGTGAAGGAGCCGCAAAAGAGAATCGCGTACAGAAGAGGCGCTACTGAGATTAAACAGCATCCGTTCTTCGATGGAGTGAACTGGGCGTTAGTGAGAAGCGCTATGCCGCCGCACGTGCCGGAGCCGGTCGACTTCTCACAGTTCGCCCGTAAGAAGAGCGGTGGTAGCGGTGGAGGCAGTGGCGGTGGAGCGGTAGAAGTAGCAGCGGCAGGAGCGGCGGCGGCGGCGGCGTCACCTGGGGAGAGTTCTTCGCCTTCTACTGGTCGCGATCCCAATTATGTGGATTTTGAATACTTCTAG 1686 51.6 MWSKSDNKPDGSEMFSNSSKGENDCHGGMNVNAPNFVKNPPDSLRRIDQIAKNGINSGNQTATMNHEFHSGQAGGSIAPIPSGAPATNMKNINNNNNSTFFPTKSGSDGMETLGMVIKPHTGGDVRWDAVNMVSKGGQLNLSHFRLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKVVRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGSSTTGHAGTNGGGSGSGGILDDEFAVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGALPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVGQPLRFPETPQVSLQARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFSQFARKKSGGSGGGSGGGAVEVAAAGAAAAAASPGESSSPSTGRDPNYVDFEYF 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 680519 682633 - Cp4.1LG19g00850.1 Cpe19g00087 485495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00087 561 ProSiteProfiles Protein kinase domain profile. 144 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00087 561 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 90 561 - -
Cpe19g00087 561 Pfam Protein kinase domain 379 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00087 561 Pfam Protein kinase domain 145 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00087 561 Gene3D Phosphorylase Kinase; domain 1 142 227 - -
Cpe19g00087 561 Gene3D Transferase(Phosphotransferase) domain 1 228 297 - -
Cpe19g00087 561 PANTHER FLIPPASE KINASE 1-RELATED 90 561 - -
Cpe19g00087 561 MobiDBLite consensus disorder prediction 1 30 - -
Cpe19g00087 561 MobiDBLite consensus disorder prediction 1 25 - -
Cpe19g00087 561 SMART serkin_6 144 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00087 561 CDD STKc_phototropin_like 142 506 - -
Cpe19g00087 561 MobiDBLite consensus disorder prediction 532 561 - -
Cpe19g00087 561 Gene3D Transferase(Phosphotransferase) domain 1 361 503 - -
Cpe19g00087 561 MobiDBLite consensus disorder prediction 86 104 - -
Cpe19g00087 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Cpe19g00087 561 MobiDBLite consensus disorder prediction 70 104 - -
Cpe19g00087 561 SUPERFAMILY Protein kinase-like (PK-like) 141 509 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00087 Cpe-Chr19:680519 Cpe20g00678 Cpe-Chr20:4641885 0 dispersed
Cpe10g01151 Cpe-Chr10:8351951 Cpe19g00087 Cpe-Chr19:680519 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63016 PF00069 Pkinase 1.60E-37 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00087 - - cmos:111435499 850.506