Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00109 ATGGCGGCAGCTCAGCTTACAGGATCTCTAATTTCTGCGAAGAATCTGCCTTCTTTCAATGGGCTTCGTCCTTCTGCGGTGAAATTCTCTCCTTCTATTGCTCATATGATAGTGGGGGGTCGGGCCAACAGATCTTACACTGGCTTGGTTGTTAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCGATCAAGCCATTGGGCGACAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACAGCTCAGTCGAAACCTCAAGGTGGGGAGGTTGTTGCTGTTGGAGAAGGCAAGTCAATTGGAAATACCAAAGTGGAAAGTAGTGTAAAGACTGGTGCTCAAGTTGTGTACTCCAAGTATGCTGGAACTGAGTTAGAGTTCAATGGTTCAAAGCATCTTATTCTGAAGGAAGATGATATCGTGGCTGCGGCTGAGGAAAAAACAGCAGGAGGTTTGTTGCTGACAGAGGCATCCAAAGAGAAACCGTCGATCGGAACGGTGATAGCAGTTGGCCCTGGTCATCTGGACGAGGAGGGCAACAAGAAACCGCTTTCGATTGCAGCGGGAAATAACGTTATGTACTCGAAGTATGCTGGGAACGAGTTCAAGGGCAAAGATGGATCTGATTACATCGCTTTGAGGGCTTCAGACGTGATTGCAATTCTATCTTAG 702 47.01 MAAAQLTGSLISAKNLPSFNGLRPSAVKFSPSIAHMIVGGRANRSYTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKSIGNTKVESSVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVAAAEEKTAGGLLLTEASKEKPSIGTVIAVGPGHLDEEGNKKPLSIAAGNNVMYSKYAGNEFKGKDGSDYIALRASDVIAILS 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 890426 893723 - Cp4.1LG19g01190.1 Cpe19g00109 485517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00109 233 SUPERFAMILY GroES-like 62 155 IPR011032 -
Cpe19g00109 233 Gene3D GroES chaperonin 153 233 IPR037124 GO:0006457
Cpe19g00109 233 Gene3D GroES chaperonin 56 152 IPR037124 GO:0006457
Cpe19g00109 233 CDD cpn10 153 232 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe19g00109 233 ProSitePatterns Chaperonins cpn10 signature. 64 88 IPR018369 GO:0005524|GO:0006457
Cpe19g00109 233 PRINTS 10kDa chaperonin signature 120 132 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe19g00109 233 PRINTS 10kDa chaperonin signature 64 79 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe19g00109 233 PRINTS 10kDa chaperonin signature 141 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe19g00109 233 PRINTS 10kDa chaperonin signature 86 107 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe19g00109 233 PIRSF Cpn21 1 154 IPR017416 GO:0006457|GO:0046914|GO:1901671
Cpe19g00109 233 PIRSF Cpn21 151 233 IPR017416 GO:0006457|GO:0046914|GO:1901671
Cpe19g00109 233 Pfam Chaperonin 10 Kd subunit 64 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe19g00109 233 Pfam Chaperonin 10 Kd subunit 153 231 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe19g00109 233 SUPERFAMILY GroES-like 153 232 IPR011032 -
Cpe19g00109 233 CDD cpn10 63 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe19g00109 233 PANTHER 20 KDA CHAPERONIN, CHLOROPLASTIC 1 233 - -
Cpe19g00109 233 Hamap Co-chaperonin GroES [groES]. 63 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe19g00109 233 SMART Cpn10_2 155 232 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe19g00109 233 SMART Cpn10_2 63 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe19g00109 233 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 233 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00294 Cpe-Chr18:4482400 Cpe19g00109 Cpe-Chr19:890426 2.52E-150 dispersed
Cpe19g00109 Cpe-Chr19:890426 Cpe19g00251 Cpe-Chr19:2066849 2.02E-06 dispersed
Cpe19g00109 Cpe-Chr19:890426 Cpe17g00303 Cpe-Chr17:2058701 7.12E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00109 K04078 - csv:101212396 395.201