Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00111 ATGGGAAAGGAAAATTTGTTGCAGTGTGTTGATGAAAAAGCTGAAGTGAATGGTTGTTCAACAATTGGGAATGATGAAGATTTGGGTTCTCAGTCTCGCCATAGTGTAGGCAAGGAATTTGGGGCAAGTTGTCGTGTGTGTCAATGTACTGAATCGGACAGAAGGGGTGATGCTGCCTTAGGATTTCTTGGCATCACTTCTCCGAAAATGGAAGCAAGAAAAAACGACGAGGATTCTAAGCCCGAGAAGCAAAGTGTAAAAAATGTTAAAAGGGATTCTGGTTCAATTGAGTTCATAGGTCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATTGAAATGGGTTCATGTCATTATGAAGATGCATTAGTCGAGCTTGGATGTTCTTGCAAGAGTGACCTTGCTCTCGTACATTATGCGTGTGCTCTCAAGTGGTTTGTCAATCATGGATCTACAGTTTGTGAAATCTGTGGATGTGTTGCAGAAAATATTAGAACTAATGACTTTAGAAAGGTTGTGAGTTCTTTGAAGGAATATGAAGCTTTAAGGGAAAGAACTGCTAATGGGGAACCTAATCCTATGCATACTAATACCGGTACTGATATAGATCCTGATGCTGTTGCTGCCATCCGCAGGCAGCGACTTTGTGAAATCTCATTGTGGTTTAGTCCTCATAATTATAGTAGCAACAATAATTCTACTGCAGCCTCCCAGGTTGCTTTGGAACATCCGAATATCATCTCGGAAAATGTTATTAATGCTGAAAATCCTGCAACCAGATGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACTGGACTGCTTACTGTGACGCTCGCTTGCCTAATAGCTCCTCGTCTGGGGAAGAAAACAGCTAAAAGTGGCCTTCACATTCTTCTTGGAGGAGTTTGTGCGTTAGCCGTGGTTGTTTTCTTCCGCTTTGATAAAATACAGTCTTGCACGATATTGGGCTATTTTGTTCATCTTTTTGTTCCTGGTGTTGTTCGGCATTTGGGCATCGAGGACACATGGTGCTCGTACGACGTAATTCGGTTGTCTGAGTATGAAGTTGACATTGGGAAAGGTAGTTAA 1092 42.12 MGKENLLQCVDEKAEVNGCSTIGNDEDLGSQSRHSVGKEFGASCRVCQCTESDRRGDAALGFLGITSPKMEARKNDEDSKPEKQSVKNVKRDSGSIEFIGPNGEVFICKADIEMGSCHYEDALVELGCSCKSDLALVHYACALKWFVNHGSTVCEICGCVAENIRTNDFRKVVSSLKEYEALRERTANGEPNPMHTNTGTDIDPDAVAAIRRQRLCEISLWFSPHNYSSNNNSTAASQVALEHPNIISENVINAENPATRWAVEGTGILLATGLLTVTLACLIAPRLGKKTAKSGLHILLGGVCALAVVVFFRFDKIQSCTILGYFVHLFVPGVVRHLGIEDTWCSYDVIRLSEYEVDIGKGS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 899755 903894 - Cp4.1LG19g01240.1 Cpe19g00111 485519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00111 363 Pfam RING-variant domain 123 157 IPR011016 GO:0008270
Cpe19g00111 363 SUPERFAMILY RING/U-box 123 160 - -
Cpe19g00111 363 ProSiteProfiles Zinc finger RING-CH-type profile. 100 164 IPR011016 GO:0008270
Cpe19g00111 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 160 IPR013083 -
Cpe19g00111 363 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 25 315 - -
Cpe19g00111 363 PANTHER ZINC FINGER, RING-CH-TYPE 25 315 - -
Cpe19g00111 363 SMART ringv_2 117 158 IPR011016 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g01253 Cpe-Chr10:9691445 Cpe19g00111 Cpe-Chr19:899755 0 dispersed
Cpe10g01254 Cpe-Chr10:9702542 Cpe19g00111 Cpe-Chr19:899755 2.04E-10 dispersed
Cpe19g00111 Cpe-Chr19:899755 Cpe13g01080 Cpe-Chr13:8732164 5.01E-09 dispersed
Cpe19g00111 Cpe-Chr19:899755 Cpe20g00846 Cpe-Chr20:7608385 2.22E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00111 - - csv:101218157 520.776