Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00146 ATGGAGAAGAAAGGGGCTATCTTGATGCAACGTTATGAATTAGGAAGGCTGTTGGGGCAGGGAACCTTTGCCAAGGTTTACTATGCCAGAGACATTAAAACTGGCTTGTGTGTGGCTATTAAAGTTATTGACAAAGAGAAGATCTCGAAGGTTGGGATGATTGATCAAATCAAGAGGGAGATCTCTGTCATGAGAATAGTTAAGCATCCGAACGTAGTTGAACTTTATGAGGTTATGGCAAGCAAAACTAAAATTTACTTTGTCATGGAATATGTCAAAGGTGGTGAGCTTTTCAATAAGGTATCCAAAGGGAAGCTTAAAGAAGGTGCTGCGCGGAAATTCTTTTGGCAGCTGATCAGTGCTATCGATTATTGCCACAGTAGAGGCGTATGGCATCGAGATTTGAAACCAGAAAATTTACTACTGGATGAACATGGTAATCTGAAGGTTTCCGATTTTGGGTTGAGTGCTCTTGTTGAATCAAAATGCCAAGATGGGTTGCTCCATACTACCTGTGGAACACCTGCTTACGTTGCTCCAGAAGTCATTAACAGGAGAGGTTATGATGGATGCAAAGCTGATATTTGGTCATGCGGAGTGATCTTATTCGTTCTACTGGCTGGTTATCTCCCATTTCATGATTCAAATCTAATGGAAATGTATAAGAAGATCGGAAAAGGAGAATTTAAATTCCCCAACTGGTTTACACCAGAGGCGCGCAGGCTATTGTCGAAGATTTTGGATCCTAACCCAAATACTAGGATATCTATTGCCAAAATAATGGGAAGTTCTTGGTCAAGGAGGGGGTTGGATGTGAAACCCCGAATTAATGCAGAAGAAGTGAAAGAAGTCGATCCTTCAGAAGTCGATGCAGTTTTCGGGTCTTTAACGGAGGATAGAGATTCTGTTAGAGAGCTGAAGCAATTAGTGGAAAAGCCATCGAATTTGAATGCCTTTGACATTATCTCCTTGTCAGCAGGTTTTGATTTGACAGGTTTGTTCGAGGAGACTACTGATCAAAAGAAAGAAGTAAGATTCACATCAAACAAGCCTGCGTCCACCATCATCTCAAAACTGCAAGATCTCGCAAAGTGCATGAAACTGAAAATAATGAAGAAAGACAGAGGCGTATTGAAGATCGAAGGGTGTAAGGAAGGTCGAAAAGGACCCGTATGCATCGACGCCGAGATTTTTGAGGTTGCCCCATCATTCCATGTAGTTGAAATGAAGAAATCGAACGGAGATACTCTGGAATATCATAAGATCATGAAAGAGGATATAAGACCTGCTCTGAAGGATATTGTATGGACCTGGCAAGTTGAGCAGCCACAGCAAGAACAAGAAGTGCTACAACAGTGTCTTTGA 1365 41.61 MEKKGAILMQRYELGRLLGQGTFAKVYYARDIKTGLCVAIKVIDKEKISKVGMIDQIKREISVMRIVKHPNVVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKEGAARKFFWQLISAIDYCHSRGVWHRDLKPENLLLDEHGNLKVSDFGLSALVESKCQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFHDSNLMEMYKKIGKGEFKFPNWFTPEARRLLSKILDPNPNTRISIAKIMGSSWSRRGLDVKPRINAEEVKEVDPSEVDAVFGSLTEDRDSVRELKQLVEKPSNLNAFDIISLSAGFDLTGLFEETTDQKKEVRFTSNKPASTIISKLQDLAKCMKLKIMKKDRGVLKIEGCKEGRKGPVCIDAEIFEVAPSFHVVEMKKSNGDTLEYHKIMKEDIRPALKDIVWTWQVEQPQQEQEVLQQCL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1152168 1153532 + Cp4.1LG19g01420.1 Cpe19g00146 485554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00146 454 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 446 - -
Cpe19g00146 454 SUPERFAMILY Protein kinase-like (PK-like) 8 275 IPR011009 -
Cpe19g00146 454 Gene3D Kinase associated domain 1, KA1 310 437 - -
Cpe19g00146 454 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00146 454 Pfam NAF domain 313 372 IPR004041 GO:0007165
Cpe19g00146 454 Pfam Protein kinase domain 12 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00146 454 Gene3D Transferase(Phosphotransferase) domain 1 92 271 - -
Cpe19g00146 454 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Cpe19g00146 454 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cpe19g00146 454 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Cpe19g00146 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cpe19g00146 454 CDD CIPK_C 317 432 - -
Cpe19g00146 454 CDD STKc_SnRK3 11 265 - -
Cpe19g00146 454 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00146 454 PANTHER - 2 446 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00992 Cpe19g00146 CCT
Cpe10g00992 Cpe19g00146 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00997 Cpe-Chr5:6525607 Cpe19g00146 Cpe-Chr19:1152168 0 dispersed
Cpe16g00683 Cpe-Chr16:7088889 Cpe19g00146 Cpe-Chr19:1152168 0 dispersed
Cpe19g00146 Cpe-Chr19:1152168 Cpe20g00467 Cpe-Chr20:2703149 0 dispersed
Cpe10g00992 Cpe-Chr10:5638980 Cpe19g00146 Cpe-Chr19:1152168 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63017 PF00069 Pkinase 8.50E-75 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00146 K07198 - csv:101209068 768.459