Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00148 ATGCCGGAATTCGACGGCGGCGACCCTTCACCGGAGGGGATTCTGTTCGGAAAATATGAACTCGGGAAGCTTTTAGGCCGTGGAGCCTTCGCGAAGGTCTACCATGGCAGAAACGTTCATACAGGAAAAAGCGTTGCGATTAAAGCTGTTAACAAACTCAAGGTCTTAAATGGCGGTTTCACGGCGCACGTTAAGAGAGAAATTGATATCATGCGCCGCCTCCGCCATCCCAACGTCGTTCGTCTTTTCGAAGTTCTTGCAACGAAGACGAAGATTTATTTCGTAATGGAATTCGCCAAAGGCGGAGAGCTTTTCACGAAGGTTTCCAAAGGACGATTCAGTGAGAATCTCAGCCGTCGATATTTTCAGCAATTGATTACCGCCGTTGGATACTGTCATTCCAGAGGAATTTTTCATCGCGATTTGAAACCGGAAAATCTCCTTCTCGATGAAAATTTCGATCTCAGAGTTTCGGATTTCGGACTCGGTGCTTTAACGGATCAGATTCGACCCGACGGATTGCTTCATACACTCTGTGGAACTCCGGCGTACGTCGCGCCGGAGATTCTCGCGAAGAAAGGCTACGACGGCGCGAAGATCGACGTCTGGTCTTGCGGTATAATCCTCTATGTTCTTACTGCCGGATTTCTTCCGTTTAATGATTCCAATTTAATGGCGATGTATCGGAAGATTTACAGAGGCGATTTCCGGTGTCCGAAATGGACGTCGCCAGATCTCCGGCGGTTTTTATCGCGGCTTTTGGATACGAATCCGGAGACGAGGATCACCGTCGATGAGATTCATCAAGATCCGTGGTTCAGAAAGGGATTTCAAGAGGAGAAGATTCAATTCGAGGATTATTCGGTTTCAGAGCTTTACGGCGATATGAACAATGCGAAATGTTTGAATGCTTTTGATTTAATTTCGTTCTCTCTTTGCTTCGATTCAACTGGATTGATCAACGAGACGGAATTTTCGTCCGATGTTGAGAGGTTTCTCTCCGCCGAATCGCCGGAGAAGATCATAATGACGGTGGAGGAGGTTTCGAAGTCGGAAAATGCGGCGGTGGAGAAGAACGGTTGGGGAGCTAGAGTGGAAGGGCACGACGGCGGATTCGTCGCCGTTATAGAGATTTTCCGGCTGACGGAGGAATTAGTGGTGGTTGAGATCAAAAACAGAGTGAGGGAAATCGATCAAATTTGGAAAGAAAAATTAAGACCTCAACTCGATTGTTTGATCTACCAGTCGGAATAA 1254 47.21 MPEFDGGDPSPEGILFGKYELGKLLGRGAFAKVYHGRNVHTGKSVAIKAVNKLKVLNGGFTAHVKREIDIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFTKVSKGRFSENLSRRYFQQLITAVGYCHSRGIFHRDLKPENLLLDENFDLRVSDFGLGALTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTAGFLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLRRFLSRLLDTNPETRITVDEIHQDPWFRKGFQEEKIQFEDYSVSELYGDMNNAKCLNAFDLISFSLCFDSTGLINETEFSSDVERFLSAESPEKIIMTVEEVSKSENAAVEKNGWGARVEGHDGGFVAVIEIFRLTEELVVVEIKNRVREIDQIWKEKLRPQLDCLIYQSE 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1180440 1181693 - Cp4.1LG19g01440.1 Cpe19g00148 485556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00148 417 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Cpe19g00148 417 CDD CIPK_C 303 410 - -
Cpe19g00148 417 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 13 415 - -
Cpe19g00148 417 Gene3D Phosphorylase Kinase; domain 1 12 98 - -
Cpe19g00148 417 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00148 417 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00148 417 PANTHER - 13 415 - -
Cpe19g00148 417 SUPERFAMILY Protein kinase-like (PK-like) 15 284 IPR011009 -
Cpe19g00148 417 Pfam NAF domain 300 358 IPR004041 GO:0007165
Cpe19g00148 417 Gene3D Kinase associated domain 1, KA1 298 415 - -
Cpe19g00148 417 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00148 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Cpe19g00148 417 Gene3D Transferase(Phosphotransferase) domain 1 99 279 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00995 Cpe19g00148 CCT
Cpe10g00995 Cpe19g00148 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00998 Cpe-Chr5:6530352 Cpe19g00148 Cpe-Chr19:1180440 0 dispersed
Cpe16g00684 Cpe-Chr16:7092122 Cpe19g00148 Cpe-Chr19:1180440 0 dispersed
Cpe19g00148 Cpe-Chr19:1180440 Cpe19g01074 Cpe-Chr19:7327724 1.10E-163 dispersed
Cpe10g00995 Cpe-Chr10:5660936 Cpe19g00148 Cpe-Chr19:1180440 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63018 PF00069 Pkinase 8.50E-71 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00148 - K12761 csv:101208826 725.317