Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00149 ATGTGGCTACTTACACAGAACGAATCTATTGCTAATAATTTTCATGAACTCACCTTGGATTTATCGACTCTTCTTGATATTTTTCCTGTGAAGGACGCTGGATTAACGGAAGACGTTGAGGAATTGTTCTATCTCTTGAGAAATCATTGCTCCGAATCCTCCGCCTTCGTCGATCCGAGAGATGAAGATCTTCGATTCAGAGTTTTGAAAACGATCGATCGGATTAGAGACGAAATCGTTCCGGATTATACCGAGTTGTCAGAGATTTTCTCGAGGATTGATCTTCGAGATTCTTCGAGTTGCAGAGAGGAAATCGAGAATCTGGAAGACGAAGTACAGAATCAAACGGATGAGAAATCGAGATCTGATGTGATTGCGTTGATCGGATTTGTTCGTTACGCGAAATGCGTTCTCTACGGCGCATCGACGCCGGGATCTGGATTTCAGCGGAAGGATTCGATCTCCGATTTGGCTTTACCAGCGGATTTCAGGTGTCCGATTAGTCTGGATTTAATGCACGATCCTGTAGTCGTGGCGACAGGTCATACGTACGATCGTGCGGCCATTACGCTCTGGATTGAATCTGGGCATAACACGTGTCCCAAGACAGGTCAGACTCTGGCCCACACGGACCTAATTCCGAACCGGGCTTTGAAAAATTTGATAGCGATGTGGTGCCGTCAGGAGAGAATTCCGTTTGATGTAACGGAAAGTAACAAGGGGGGTATTAACGGTNGGTGCCGTCAGGAGAGAATTCCGTTTGATGTAACGGAAAGTAACAAGGGGGGCATTAACGGTGTTACGTTAAACAAAGCGGCTTTGGAAGCAATGAGAATGACGGNCGTAACGGAAAGTAACAAGGGGGGTATTAACGGCGTTACGTTAAACAAAGCGGCTTTGGAAGCAATGAGAATGACGGCGTCGTTTCTTGTTAACAAACTCGCAACGCCATTAGATTCCGTAAACGACGCGAACGGCGTCGTTTACGAGCTTCGCGTTTTGGCCAAAACAGATTCCGGCAGCCGTGGATTCATCGCGCAAGCCGGAGCTCTGCCGTTGCTTGTACGTCACCTCATCTCCGACGACCCGACTCTCCAAGTTAACGCCGTCACGACAGTGCTCAACCTCTCTATTCTTGAAGCGAACAAGTCTCTGATTATGGAGACGGACGGCGCGTTGATTGGAGTGATTGAGGTGCTCCGGTCCGGCGCCACGTGGGAGGCGAAAGGGAACGCCGCTGCCACAATCTTCAGCCTATCCAGTGTCCATAGTTACCGGCGGAGATTAGGAAGGAAGACACGTGTCATAAGGGGATTGCTCGATTTGGCCAAAGACGGGCCGATTAGTTCGAAGAGGGATGCTCTGGTGACGATTCTAACATTAGCCGGTGATCGAGAGACCGTCGGGAGGTTAATTGAAGGTGGGGTTATGGAGACGGTGAGCCATGTGATGAACAGTTTACCGGAGGAGGCGGTGACGATTCTGGAAATGGTAGTGAGGAAAGGGGGATTTGTGGCGATTGCTTCGGCTTTCAATCTGATTAAGAAATTGGGGGCGGTTTTGAGAGAGGGCTCCGATAGGGCTCGAGAGAGCGCGGCGGCGGCTCTGGTGACAATGTGCCGGCAAGGTGGGTCCGACATGGTGACGGAGCTGGCATCGATGGCTGGAATTGAGAGAGTCATTTGGGAGATGATGGGGAGTGGGACGATGAGGGGACGGCGGAAAGCGGCGTCGCTGTTGAGAATACTCCGACGATGGGCGGCGGGTTTGGACAGAAACGGCGGCGTGGGCGGAGGAGACTTAACGATGGTGAGTTCTTCAAGAATGGTCGGCGATTCCACCGCCATTGTTAGTCCATCGAGAGGAGCAATTGTTAATAGCTAG 1884 50.64 MWLLTQNESIANNFHELTLDLSTLLDIFPVKDAGLTEDVEELFYLLRNHCSESSAFVDPRDEDLRFRVLKTIDRIRDEIVPDYTELSEIFSRIDLRDSSSCREEIENLEDEVQNQTDEKSRSDVIALIGFVRYAKCVLYGASTPGSGFQRKDSISDLALPADFRCPISLDLMHDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTDLIPNRALKNLIAMWCRQERIPFDVTESNKGGINGXCRQERIPFDVTESNKGGINGVTLNKAALEAMRMTXVTESNKGGINGVTLNKAALEAMRMTASFLVNKLATPLDSVNDANGVVYELRVLAKTDSGSRGFIAQAGALPLLVRHLISDDPTLQVNAVTTVLNLSILEANKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSVHSYRRRLGRKTRVIRGLLDLAKDGPISSKRDALVTILTLAGDRETVGRLIEGGVMETVSHVMNSLPEEAVTILEMVVRKGGFVAIASAFNLIKKLGAVLREGSDRARESAAAALVTMCRQGGSDMVTELASMAGIERVIWEMMGSGTMRGRRKAASLLRILRRWAAGLDRNGGVGGGDLTMVSSSRMVGDSTAIVSPSRGAIVNS 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1189891 1191774 + Cp4.1LG19g01520.1 Cpe19g00149 485557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00149 627 PANTHER U BOX DOMAIN-CONTAINING 284 600 - -
Cpe19g00149 627 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 245 281 - -
Cpe19g00149 627 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 1 241 - -
Cpe19g00149 627 SUPERFAMILY ARM repeat 309 583 IPR016024 -
Cpe19g00149 627 SUPERFAMILY RING/U-box 150 231 - -
Cpe19g00149 627 Coils Coil 98 125 - -
Cpe19g00149 627 CDD RING-Ubox_PUB 163 205 IPR045210 -
Cpe19g00149 627 SMART Ubox_2 162 225 IPR003613 GO:0004842|GO:0016567
Cpe19g00149 627 Pfam Armadillo/beta-catenin-like repeat 341 377 IPR000225 GO:0005515
Cpe19g00149 627 Pfam U-box domain 160 230 IPR003613 GO:0004842|GO:0016567
Cpe19g00149 627 PANTHER U BOX DOMAIN-CONTAINING 245 281 - -
Cpe19g00149 627 PANTHER U BOX DOMAIN-CONTAINING 1 241 - -
Cpe19g00149 627 Gene3D - 307 582 IPR011989 -
Cpe19g00149 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 234 IPR013083 -
Cpe19g00149 627 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 284 600 - -
Cpe19g00149 627 ProSiteProfiles U-box domain profile. 158 232 IPR003613 GO:0004842|GO:0016567
Cpe19g00149 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 349 391 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00996 Cpe19g00149 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00149 Cpe-Chr19:1189891 Cpe20g00479 Cpe-Chr20:2772873 3.57E-118 dispersed
Cpe10g00996 Cpe-Chr10:5674434 Cpe19g00149 Cpe-Chr19:1189891 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00149 - - cpep:111781599 1091.64