Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00170 ATGTTATGGTCAAAATCTTTATCTGTTGTTGCAATGGTTGTGATGGATATCATGGCGATTAGGGTTAGGCCATTCACCCGAATGGAAGCGTCTGGTAGCGACCCCGACTCTCATAGAACTGCTTCCATCAGTGGTAGTTCAAGAAGGTTTGGAATGTTAGCTGCCTCTAATATGATTCAGGCTCCGCTTTCCGCTCTGTTAGAGTATTCGGGTCTTCTTCGTGGCCGCCCTAGTCATCAAGAATCCGAGGCATTGATAAGTGCACGATTACCTTCGGGATTGCGAGACCATCTTCGTAGTCAGATTGAAGAATCTTCTGGTGTCACTAACGACGGAGAGGTTTCGATTAGGATAATTGGAGCAGGGGAACAAGAACATGTTAGGGACAGTGCTGGACTAGTAGTTGGGGAAGTGAGGGAGCTTGGCGGTCAGAATTCAGCATCTTTGCAATCTGTTTCGGGGTTGGCATCATCAGAGTTTAGCCAGGGAGATGCTGCTACTGGACGAGGTGCGATAGAGGGTATTCCTCAACCGGTTAACGAAGGTCCTGATGGAGATGCGTCGGAGGCAGCTGGGGGAAATAGCAGGGATTCTTCTTACCAAAGGTACGATATTCAACAGGCTGCCCGGGGGATTGAGCAGATTCTTCCATTTAGTTTTCTTCTACTGGTAGTCTTCATTCGACAGCATTTGCAAGGCTTCTTTGTGACAATTTGGATTGCTGCTTTCATGTACAAGTCTAATGATATATTGCGAAAACAAACAGCTTTGAAGGGAGAGAGGAAAATCTCTGTTTTGGTTGCCATTTCTCTTGCATTCACTTTCCATATTATTGGTGTGTACTGGTGGTATCAGAAGGACGATCTCTTATATCCGTTGATCATGCTTCCTCCCCGAGCAATACCTCCTTTTTGGCACGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGTCAAGCAGGGATGGTGGTCAAGTGTGTTTTATTGATGTATTACAAGAACAGCCGAGGCCGAAATTATCGTAAACAGGGACAAATGCTAACTTTAGTCGAATATCTGCTTCTACTGTACCGTGCATTGTTGCCTACTCCCGTCTGGTATCGTTTCTTTTTGAACAAAGAGTACGGAAGTTTATTTTCGTCACTATTGACAGGACTGTACTTAACTTTCAAACTCACATCTGTTGTCGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCATTGTCGCGTAAAGAGGTGCATTATGGGGCATATGCAACATCGGAGCAGGTCAGTGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCTTACTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAGCGGGAACGGACATGTCCATTGTGTAGGGCTTTGGTTAAGCCTGCGGATCTCAGGTCATTTGGGGATGGATCAACTAGTTTGTTTTTCCAGGTTTTCTAA 1485 44.98 MLWSKSLSVVAMVVMDIMAIRVRPFTRMEASGSDPDSHRTASISGSSRRFGMLAASNMIQAPLSALLEYSGLLRGRPSHQESEALISARLPSGLRDHLRSQIEESSGVTNDGEVSIRIIGAGEQEHVRDSAGLVVGEVRELGGQNSASLQSVSGLASSEFSQGDAATGRGAIEGIPQPVNEGPDGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVAISLAFTFHIIGVYWWYQKDDLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQAGMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQVF 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1381119 1388967 + Cp4.1LG19g01670.1 Cpe19g00170 485578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00170 494 SUPERFAMILY RING/U-box 428 476 - -
Cpe19g00170 494 MobiDBLite consensus disorder prediction 160 198 - -
Cpe19g00170 494 ProSitePatterns Zinc finger RING-type signature. 448 457 IPR017907 -
Cpe19g00170 494 CDD RING-HC_RNFT1_like 432 471 - -
Cpe19g00170 494 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 28 494 - -
Cpe19g00170 494 Pfam Zinc finger, C3HC4 type (RING finger) 431 474 - -
Cpe19g00170 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 481 IPR013083 -
Cpe19g00170 494 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 28 494 IPR044235 GO:0061630|GO:1904294
Cpe19g00170 494 ProSiteProfiles Zinc finger RING-type profile. 433 471 IPR001841 -
Cpe19g00170 494 SMART ring_2 433 470 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00078 Cpe-Chr1:471537 Cpe19g00170 Cpe-Chr19:1381119 0 dispersed
Cpe01g00957 Cpe-Chr1:5668922 Cpe19g00170 Cpe-Chr19:1381119 1.25E-180 dispersed
Cpe14g00220 Cpe-Chr14:1248225 Cpe19g00170 Cpe-Chr19:1381119 9.91E-11 dispersed
Cpe19g00170 Cpe-Chr19:1381119 Cpe01g00346 Cpe-Chr1:1971042 8.35E-11 dispersed
Cpe10g01018 Cpe-Chr10:5875735 Cpe19g00170 Cpe-Chr19:1381119 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00170 - K22379 csv:101205267 831.632