Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00176 ATGACGAGACAGAAAATTCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACGTTTTCAAAGAGAAGAAGAGGGCTATTCAAAAAAGCTCATGAATTAGCCACTCTTTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGCAAGCTATTTGACTATTCTAGCTCAAGCATGCAGGAGTTGCTGAGAAGACATAACATGATACCAGAGGTTAATAGCTTTGGTCAGCAGCCTCCATCTCAGGTTGAAAAGGATGCCTATGCTAAATTGAGTGAAGAATTTGCAGCCAAAACCAAAGAGCTTAAGCATATGAGGGGAGAGGATCTTCAAGATTTGGGAATAGAAGAATTAAAGCAGCTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTTATAGAGACCAAGGATGACAAGTTTCTAAAAGAAATTGGTGCTGGAAAGGAAAAGGAAGCTTTGTTGATGAAAGAGAATCAGAGACTAAGAAATGGGATGGTAACTTTGAATCATAGGGAGCAAGAACAAGCAGTGATTGGTGGGAGCTCCTTGGGGTCAAAGTCAAACACCACCAATAGCAGCTCCTCACCAAACCCTAATTCTCATGATTTTGATGACATTTCTCTTAAATTGGGTCTGTGA 648 39.97 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMQELLRRHNMIPEVNSFGQQPPSQVEKDAYAKLSEEFAAKTKELKHMRGEDLQDLGIEELKQLEKLLEIGLNRVIETKDDKFLKEIGAGKEKEALLMKENQRLRNGMVTLNHREQEQAVIGGSSLGSKSNTTNSSSSPNPNSHDFDDISLKLGL 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1423294 1429937 - Cp4.1LG19g01700.1 Cpe19g00176 485584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00176 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe19g00176 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe19g00176 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe19g00176 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 - -
Cpe19g00176 215 Gene3D - 15 75 IPR036879 GO:0003677|GO:0046983
Cpe19g00176 215 Coils Coil 91 111 - -
Cpe19g00176 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe19g00176 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe19g00176 215 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Cpe19g00176 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe19g00176 215 ProSiteProfiles K-box domain profile. 84 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe19g00176 215 MobiDBLite consensus disorder prediction 181 215 - -
Cpe19g00176 215 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 213 - -
Cpe19g00176 215 MobiDBLite consensus disorder prediction 181 205 - -
Cpe19g00176 215 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Cpe19g00176 215 Pfam K-box region 85 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe19g00176 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00167 Cpe-Chr7:992248 Cpe19g00176 Cpe-Chr19:1423294 3.64E-59 dispersed
Cpe10g00536 Cpe-Chr10:3143335 Cpe19g00176 Cpe-Chr19:1423294 3.14E-60 dispersed
Cpe19g00176 Cpe-Chr19:1423294 Cpe02g01396 Cpe-Chr2:12203422 4.45E-33 dispersed
Cpe19g00176 Cpe-Chr19:1423294 Cpe14g00230 Cpe-Chr14:1323554 6.37E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50958 PF01486 K-box 9.90E-16 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00176 - - csv:101223132 299.286