Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00182 ATGGCAAGTCTGAGCAGGAGAGTCCTACTTACATCTGCAGCTATGAAAAGAAGAATCACAACAGATGCCCGGCAGATTTTATTGTCTCCACCTCTCATATCCATTGATTTTCCTGATATTTGGAATAGTTCAAGCTGTCTTGATTATTCTTCCACTGCTACATCGTATGATGACCCGCAGAGTACAACAGTAATTGATGGTAGGGTGATCGCTGATGAAATTACATCAGGAATAACTAGTGAGGTGAGGAGGATGAAGAACTCTATGGGAAAGGTTCCTGGCTTGGCTGTAATCATGGTTGGCGAAAGAAGGGATTCACAGACTTATGTTCGCAACAAAATAGCTGCATGTGAAGAAGCTGGAATCAAGTCAGAGGTTTCTTCTTTGCCCGACAATTGTACTGAAGATCAAGTTCTTAATGTTTTGTCACATTTTCATGAAGATCCATCTATTCATGGTATACTTGTGCAGCTTCCTCTACCTCAACATTTGGATGAGGGGAAAATTCTAAGCTCTGTGCGCCTAGAAAAAGACGTTGACGGCTTTCATCCACTTAACATGGGGAACCTTGCTATGAGAGGTAGGGAACCACTTTTCTTACCCTGCACTCCCAAAGGCTGCATTGAGCTGTTGATCAGATCCGGTGTAGAAATCTCCGGGAAGAGGGCCGTGGTGATTGGAAGAAGTAATATTGTTGGATTACCCACGTCCTTGCTGTTGCAGAGGCACCATGCCACTGTCAGTATTGTGCATGCATTTACTAGGAATCCTGAACAGATTACTCGTGAAGCGGATATAGTGGTTGCTGCTGCTGGAGTCCCTAATCTGGTTCGTGGTAGTTGGCTAAAACCTGGTGCAGTGGTTATTGACGTGGGGACAAATCCAGTTGAGGATCCTAGCAGTGAGCATGGGTACCGACTAACAGGAGACGTTTGCTACGAAGAGGCATCAAGGGTGGCATCTGCTATTACGCCAGTGCCCGGTGGAGTCGGACCGATGACGGTTGCTATGCTATTACTCAACACACTGGAATCCGCTAAGCGAACGTATAGTTTTACCTAA 1062 45.48 MASLSRRVLLTSAAMKRRITTDARQILLSPPLISIDFPDIWNSSSCLDYSSTATSYDDPQSTTVIDGRVIADEITSGITSEVRRMKNSMGKVPGLAVIMVGERRDSQTYVRNKIAACEEAGIKSEVSSLPDNCTEDQVLNVLSHFHEDPSIHGILVQLPLPQHLDEGKILSSVRLEKDVDGFHPLNMGNLAMRGREPLFLPCTPKGCIELLIRSGVEISGKRAVVIGRSNIVGLPTSLLLQRHHATVSIVHAFTRNPEQITREADIVVAAAGVPNLVRGSWLKPGAVVIDVGTNPVEDPSSEHGYRLTGDVCYEEASRVASAITPVPGGVGPMTVAMLLLNTLESAKRTYSFT 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1478214 1483818 - Cp4.1LG19g01840.1 Cpe19g00182 485590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00182 353 CDD NAD_bind_m-THF_DH_Cyclohyd 176 347 IPR020631 GO:0004488
Cpe19g00182 353 Hamap Bifunctional protein FolD [folD]. 62 350 IPR000672 GO:0004488
Cpe19g00182 353 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 63 181 IPR046346 -
Cpe19g00182 353 ProSitePatterns Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 327 335 IPR020867 GO:0003824
Cpe19g00182 353 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 182 348 IPR036291 -
Cpe19g00182 353 Pfam Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 65 180 IPR020630 GO:0004488
Cpe19g00182 353 PANTHER BIFUNCTIONAL PROTEIN FOLD 1, MITOCHONDRIAL 44 353 - -
Cpe19g00182 353 PANTHER C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED 44 353 - -
Cpe19g00182 353 Gene3D - 65 326 - -
Cpe19g00182 353 Pfam Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 183 348 IPR020631 GO:0004488
Cpe19g00182 353 Gene3D Leucine Dehydrogenase, chain A, domain 1 67 344 - -
Cpe19g00182 353 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 323 341 IPR000672 GO:0004488
Cpe19g00182 353 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 169 190 IPR000672 GO:0004488
Cpe19g00182 353 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 306 322 IPR000672 GO:0004488
Cpe19g00182 353 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 134 161 IPR000672 GO:0004488
Cpe19g00182 353 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 265 294 IPR000672 GO:0004488
Cpe19g00182 353 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 216 236 IPR000672 GO:0004488
Cpe19g00182 353 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 93 115 IPR000672 GO:0004488
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g01280 Cpe19g00182 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01485 Cpe-Chr2:12774935 Cpe19g00182 Cpe-Chr19:1478214 2.16E-129 dispersed
Cpe03g01716 Cpe-Chr3:13016875 Cpe19g00182 Cpe-Chr19:1478214 4.48E-146 dispersed
Cpe08g00523 Cpe-Chr8:3383685 Cpe19g00182 Cpe-Chr19:1478214 1.58E-121 dispersed
Cpe10g01026 Cpe-Chr10:5935101 Cpe19g00182 Cpe-Chr19:1478214 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00182 - - bhj:120072803 633.254