Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00183 ATGGCGACTTACGCTTTGCTTGGCGACTCCACTGTCCGCGTTAATGGCGGTTTCGATGACGGTTCTCTGACCAGCAACTCGACGAACAGCAACGGCAGCGAAGAACTTAATCAACAGACTGTTCAAGTTCCGGTTCAGGTTTCTCAACCGCCGCCGCGATTACCGCCTGGAAAAATGGTGCGGAAGAGAATCGCGTCGGAGATAGAGATCGAAGAACTCGACGGCGGAGGCGGCGGTACCGCCGCCGTTCATCCACGGTTTTGCCGGCGGAGTTTGGCTTCCGATCGTCCTTTTGCAGGTGGAGAAAATAAGACGAATGAGAATGTGGATAACTATTGTTCTTCTTCAAACCCTAGCCATGGCGCTAACCACTCCACTGTGCATAATTTAACCGCTCTGACGTCAGTTGTGGTCGCAGGGTCAAATTTATCAAATCCTCCGTCTGGTTCTGATGCTACGGCTTCTTCCACTACCTCCAACGTCTCGTCTCTTATTGACAGTACGCTTCCCGTTCTTCGTCCTCAGCCCCACCATCGCCATTTGCAGAATCCTGCAGTCTGTGGTTTTTCTGGTTTACCTTTGTTCCCACCCGAATCGAATCACCACCACCACCACAACAAGTTAAATTCTCGCAATAATCCTTTCCCCATTCCTAATCCATGTCAGGTTGTTCTTCATAATCCTCCAACTTCTACAACGACCTCCATTATCGCCGCCGCTTCTACTCCGATGGATGATTCCTCCGCCACTGCTTGGATCGACGGTATTATCAAGGATTTAATCCACAGCTCCACTGCCGTATCCATTCCTCAGCTTATTCAGAACGTTCGTGATATTATCTACCCTTGTAACCCCAATCTTGCGAACCTTCTTGAGTTTCGTCTTCGTACTTTGACAGAACCTAACGTTCCTAACTTCGCCGCTGAGGATCAGCGTGTTAGGAAATCGCCCTTGCCGTCACCAGCGCCGGTGGGCGGCTCGGGGCTGCAGCAGAGGCAGTTCAATCAAGAACATGAGCAAGAACAGGATTGTTCTGGGTTGAAGCTTAATCTCGATTCTTCTCTGCATAATCTTCCTAATTTCTCATCTCAGCCTCCGTTTCATGACCCATACCTCCACTGGGGAGCCACTCCTACCCCAGCCCCCACTCCCTCCGTCGCCACAACCGGCGGCGAGGTTCCCGGTCATCAACTTAATCTCTCTTCTGTTCCACATTCATCACTTATTCCTCTAAACCATATCCCTTCTAAGCCACAGCCAGAACAGCCAAACTCCTGTCCGGTCAATGTGAAGGCAGCGGCAGCGGCGGCCGCACAGCCATCGCCCTCGCCGCCGACGAGTAATGATCCTTCAACGACTGCGTTACTGATTAGAGAGATAAAAGAGGAGATGAGGCAACAGAAGAGAGACGAAGAAGGGTTACACCTCTTGACTTTGCTTCTTCAATGTGCAGAAGCCGTTTCTGCCGATAATTTAGAAGAAGCCAATAAGATGCTACTGGAAATCTCGGAGTTGTCGACGCCCTTCGGTACATCGGCGCAAAGAGTGGCGGCGTATTTCTCAGAAGCAATGTCGGCGAGGCTTGTGAGCTCATGTTTAGGCATATACGCCGCTTTGCCGCCGACGTTATTGCCCCATACACACAGCCAGAAGATAGCCTCAGCCTTTCAAGTCTTCAATGGCATAAGCCCATTTGTCAAATTCTCACACTTCACAGCCAATCAAGCCATTCAAGAAGCCTTCGAAAGGGAAGAGAGAGTTCACATCATAGATCTAGACATCATGCAAGGCCTTCAATGGCCAGGCCTCTTCCACATCTTGGCGTCTCGGCCGGGTGGGCCGCCCTATGTCCGCCTCACTGGGCTGGGGACCTCTCAGGAAGTTCTTGAGGCCACTGGCAAACGCCTCACTGAATTCGCCGAGAAGCTTGGCCTTCCGTTTGATTTCTTTCCTGTTGCAGATAAAATTGGCAATCTGGACTTGGAGAGGCTCAACGTGAGCCAAAGAGAAGCCGTTGCCGTCCATTGGATGCAGCATTCTCTTTACGAAGTCACTGGTTCTGATTCCAATACGCTATGGCTTCTGCAGAGATTGGCTCCAAAAGTGGTGACGGTGGTCGAACAAGATCTGAGCCACACAGGCTCCTTCTTGGGAAGATTCGTAGAGGCCATTCATTACTATTCAGCACTGTTTGACTCTTTGGGTGTCAGCTATGGCGAAGAGAGTGAAGAGAGGCACTTAGTGGAGCAGCTACTGTTATCAAGGGAGATCAGAAACGTGCTGGCCGTCGGAGGACCGTCGAGGAGCGGCGAAGTGAAGTTCCAAAACTGGAGAGAAAAGCTGCAACAATCTGGGTTTAAGGGCATTTCTCTCGCCGGTAATGCTGCAACTCAGGCCACTCTTCTCCTCGGAATGTTCCCTTCCGATGGGTATACGCTTGTGGAAGACAATGGGACTTTGAAACTTGGGTGGAAGGATCTATGCTTGCTGACAGCGTCGGCTTGGAAGCCGCCGTTTCATCACCATGCTGCCGGCAACCACATTCCCAGGTACTGA 2556 51.17 MATYALLGDSTVRVNGGFDDGSLTSNSTNSNGSEELNQQTVQVPVQVSQPPPRLPPGKMVRKRIASEIEIEELDGGGGGTAAVHPRFCRRSLASDRPFAGGENKTNENVDNYCSSSNPSHGANHSTVHNLTALTSVVVAGSNLSNPPSGSDATASSTTSNVSSLIDSTLPVLRPQPHHRHLQNPAVCGFSGLPLFPPESNHHHHHNKLNSRNNPFPIPNPCQVVLHNPPTSTTTSIIAAASTPMDDSSATAWIDGIIKDLIHSSTAVSIPQLIQNVRDIIYPCNPNLANLLEFRLRTLTEPNVPNFAAEDQRVRKSPLPSPAPVGGSGLQQRQFNQEHEQEQDCSGLKLNLDSSLHNLPNFSSQPPFHDPYLHWGATPTPAPTPSVATTGGEVPGHQLNLSSVPHSSLIPLNHIPSKPQPEQPNSCPVNVKAAAAAAAQPSPSPPTSNDPSTTALLIREIKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPTLLPHTHSQKIASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSQEVLEATGKRLTEFAEKLGLPFDFFPVADKIGNLDLERLNVSQREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQLLLSREIRNVLAVGGPSRSGEVKFQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWKPPFHHHAAGNHIPRY 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1489557 1493789 + Cp4.1LG19g01780.1 Cpe19g00183 485591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00183 851 MobiDBLite consensus disorder prediction 95 125 - -
Cpe19g00183 851 Pfam GRAS domain family 477 836 IPR005202 -
Cpe19g00183 851 MobiDBLite consensus disorder prediction 415 451 - -
Cpe19g00183 851 MobiDBLite consensus disorder prediction 104 125 - -
Cpe19g00183 851 ProSiteProfiles GRAS family profile. 467 836 IPR005202 -
Cpe19g00183 851 MobiDBLite consensus disorder prediction 17 39 - -
Cpe19g00183 851 MobiDBLite consensus disorder prediction 307 345 - -
Cpe19g00183 851 MobiDBLite consensus disorder prediction 369 398 - -
Cpe19g00183 851 MobiDBLite consensus disorder prediction 15 39 - -
Cpe19g00183 851 PANTHER PROTEIN SCARECROW 155 838 - -
Cpe19g00183 851 MobiDBLite consensus disorder prediction 142 161 - -
Cpe19g00183 851 MobiDBLite consensus disorder prediction 381 398 - -
Cpe19g00183 851 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 155 838 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00183 Cpe-Chr19:1489557 Cpe01g01990 Cpe-Chr1:17007575 7.07E-70 dispersed
Cpe01g00556 Cpe-Chr1:3215741 Cpe19g00183 Cpe-Chr19:1489557 3.59E-161 transposed
Cpe17g01142 Cpe-Chr17:8666537 Cpe19g00183 Cpe-Chr19:1489557 2.35E-108 transposed
Cpe10g01027 Cpe-Chr10:5952091 Cpe19g00183 Cpe-Chr19:1489557 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50959 PF03514 GRAS 1.60E-126 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00183 - - bhj:120074183 1367.83