Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00185 ATGAAAATTGATCCTCCTCCCTTCTTCCTTTGTCCCATCTCTTTGCAAATTATGAAAGATCCCGTCACCGTCGCCTCCGGCATAACCTACGATCGGGAGAACATCGAGAGATGGTTATTTTCCGATAAACACACGACGTGTCCGGTCACGCAGGTGGTCTTGTCGGACTTTGATATCACTCCCAATAATACTCTCTCTCGATTGATTCAAGCTTGGTGCACTGTCAACAACAGGGTCGAGAGGATTCCGACACCAAAGCCTCCCGTCGACAAGAAGCAAATTGTCAAGATTCTTGCAGACGTGAAGCTGTCTCCTTTCTCTCAACAGAATTGTTTGCGACGACTCGGGTCCATCGCATCGGCAAACGAGATGAATAAACGTTGCATGGAAGCTGCTGGAGCTGTGGAGTTCTTGGTTGGAGTTGTGTGTAATTCCATTACCATAGACATTCTTTACAAACTTCAAATCTCTGAATCCGGCCTCAAGTTTCTTCTCGCCAACAATGGCGGCATCTTCGTGAAAACCCTAACAAAATTCTTACAAAACGGCACTTATGGCTCCCGAGCGTATGCAACAATGCTTCTTCAATCGATGTTCGAAGTCGCCGATGAGATTCAGATTCGCACTCTAAATCTTGAATTCTTCGTCGAAATCGTCCAAATTCTGAAGGATCAGATCTCGAAACAGGCCTCCAAATCGGCATTGAAATTGCTAATCGGACTCTGTTCGAGTTTCAGAAACAGAGTAAATGCGGTTCAAGCCGGTGCGGTTCCGGTTCTGATCGATCTCCTCCTGGATCTCGATTCGTCGGAGAAGCGTTTGTGCGAGATTATTCTCGTGGCGCTTGATCTGCTCTGCGGCTGTGCTGACGGCAGAGCGGAGCTATTGAACCACGCGGCGGGGATCGCCGTCGTGTCGAAGAAGATTCTCAGAGTTTCGTCGCTTGGAAGCGAGAAGGCCGTCGGAATTTTGTGCTCTATTGCGAGATTCTCGGCGAGCCAATCCGTCGTTCAGGAAATGGCGCGGCTCGGAGTTGTGGTGAAGCTCTGTTTTCTGCTTCAAGTCGTCGGCGCCGGAGCGAAAGCGAAAGAGAAGGCGAAAGAGATTCTAAAGCTTCATGGTCGAACATGGCGGAATTCTTCA 1143 48.91 MKIDPPPFFLCPISLQIMKDPVTVASGITYDRENIERWLFSDKHTTCPVTQVVLSDFDITPNNTLSRLIQAWCTVNNRVERIPTPKPPVDKKQIVKILADVKLSPFSQQNCLRRLGSIASANEMNKRCMEAAGAVEFLVGVVCNSITIDILYKLQISESGLKFLLANNGGIFVKTLTKFLQNGTYGSRAYATMLLQSMFEVADEIQIRTLNLEFFVEIVQILKDQISKQASKSALKLLIGLCSSFRNRVNAVQAGAVPVLIDLLLDLDSSEKRLCEIILVALDLLCGCADGRAELLNHAAGIAVVSKKILRVSSLGSEKAVGILCSIARFSASQSVVQEMARLGVVVKLCFLLQVVGAGAKAKEKAKEILKLHGRTWRNSS 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1508431 1510743 + Cp4.1LG19g01790.1 Cpe19g00185 485593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00185 381 SUPERFAMILY ARM repeat 94 353 IPR016024 -
Cpe19g00185 381 CDD RING-Ubox_PUB 9 51 IPR045210 -
Cpe19g00185 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 2 381 - -
Cpe19g00185 381 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Cpe19g00185 381 PANTHER WDSAM1 PROTEIN 2 381 IPR045185 GO:0061630
Cpe19g00185 381 SUPERFAMILY RING/U-box 3 77 - -
Cpe19g00185 381 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Cpe19g00185 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Cpe19g00185 381 Gene3D - 92 372 IPR011989 -
Cpe19g00185 381 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00824 Cpe-Chr16:7940610 Cpe19g00185 Cpe-Chr19:1508431 3.43E-122 dispersed
Cpe18g00220 Cpe-Chr18:3849917 Cpe19g00185 Cpe-Chr19:1508431 1.44E-61 dispersed
Cpe10g01029 Cpe-Chr10:5977745 Cpe19g00185 Cpe-Chr19:1508431 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00185 - - cmo:103485961 570.852