Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00188 ATGATTGCTGCAATCAAGGCGGCGATCGGCGATGCCGTTCTTACTTCCATGTGGATTTTCTGTGCTTCGTCTCTTGGAGTTCTTACCTCCGTGTTGTACTCGGCCGCCGGCGTTTATGGCCTTCCGCTTCATCCGCTCCTCATCACTACTACTCTGGTCTTCCTTCTCGTTTTCGTTTTCAATATAATTGGGGCTGTTTTGGGTGGCGCTAGCTTTAATCCAACTGCCACTGCCGCTTTCTATGCTGCCGGTGTTGGTCCGACCTCTCTCTTCGCCATGGCTCTCCGTTTCCCTGCTCAGGCAGCTGGTGCGGTTGCTGGTGCCCTGGCGATCAAGGAGGTGATGCCTATTCAATACAAGCACATGCTTGGTGGGCCTTCTCTGAAAGTTGACATTCATACTGGAGCCACAGCTGAAGGAGTTTTGACCTTTATAATCAGTTTTGCTGTTCTTCTAATTGTTCTCAGGGGTCCCTCCAGCCCAGTAATCAAGACATGGTTGCTGGCAATGGCCACTGTAGCTTTAATCGTTGCTGGTTCTAGTTACACAGGACCTTCCATGAATCCTGCAAATGCGTTTGGGTGGGCGTATATGAACAACAAACACGATACATGGGAGCAGTTGTACGTGTACTGGATCGCCCCGTTCATCGGAGCCATTTCGGCTGCTTGGCTTTTCAGAATCATCTTCCCACCACCAGCCCCAGCCCCAGCCTCAGCTAAGAAGAAGAAGAAAGCTTGA 741 50.88 MIAAIKAAIGDAVLTSMWIFCASSLGVLTSVLYSAAGVYGLPLHPLLITTTLVFLLVFVFNIIGAVLGGASFNPTATAAFYAAGVGPTSLFAMALRFPAQAAGAVAGALAIKEVMPIQYKHMLGGPSLKVDIHTGATAEGVLTFIISFAVLLIVLRGPSSPVIKTWLLAMATVALIVAGSSYTGPSMNPANAFGWAYMNNKHDTWEQLYVYWIAPFIGAISAAWLFRIIFPPPAPAPASAKKKKKA 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1531992 1537675 - Cp4.1LG19g01960.1 Cpe19g00188 485596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00188 246 PANTHER AQUAPORIN SIP1-1 3 244 IPR044222 GO:0015250
Cpe19g00188 246 Pfam Major intrinsic protein 4 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00188 246 Gene3D Glycerol uptake facilitator protein. 2 237 IPR023271 -
Cpe19g00188 246 SUPERFAMILY Aquaporin-like 5 243 IPR023271 -
Cpe19g00188 246 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00188 246 PRINTS Major intrinsic protein family signature 53 77 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00188 246 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00188 246 PRINTS Major intrinsic protein family signature 138 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00188 246 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00188 246 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00188 246 PANTHER AQUAPORIN SIP1-1 3 244 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g01357 Cpe19g00188 CCT
Cpe10g01037 Cpe19g00188 CCT
Cpe03g00425 Cpe19g00188 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00425 Cpe-Chr3:2384379 Cpe19g00188 Cpe-Chr19:1531992 5.59E-27 dispersed
Cpe08g01357 Cpe-Chr8:9764765 Cpe19g00188 Cpe-Chr19:1531992 3.62E-29 dispersed
Cpe19g00188 Cpe-Chr19:1531992 Cpe10g00216 Cpe-Chr10:1223766 3.00E-11 dispersed
Cpe10g01037 Cpe-Chr10:6046978 Cpe19g00188 Cpe-Chr19:1531992 2.29E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00188 K09875 - csv:101220534 410.223