Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00189 ATGAACGACTTGATGACTCAATCGTTCACGAGCTATGTGGATCTGAAGAAGGCCGCTATGAAAGATATCGACCTCGAAGCCGGTTTTGAAACGGTGTCGTCTGATACCGACAATGGTGATATGGGGCTCTTCCTTGAAGAGGCTGAGAAGGTGAAATTGGAGATGGGTTCTATTAGAGAGATTCTTGGAAAGCTCCAGCAGGCCAATGAGGAGACGAAATCTGCTCATAAACCCGAAACTTTGAAATCGCTTCGCCAGACGATTAATGGCAACATCGTTACCGTCCTGAAGAAAGCTCGATCGATCCGTTCCAAGCTTGAGGAAATGGACCGTGCTAATGATGCTAAGAAGCGGCTCTCCGCCAGCAAAGAAGGAACTGCCATTTACAGGACTCGTATCGCGGTGACGAACGGCCTGCGAAAGAAGCTAAAGGAGCTAATGATGGAGTTTCAAACCCTAAGACAAAGGATGATGACAGAGTACAAAGAGACGGTGGAGCGACGATACTTCACGGTGACGGGGGAGCACCCAGAGGAGGAGGTGATAGAGAAGATAATATCAAACGGAGGCGAGGAGTTTTTGGGGAGGGCAATAGAGGAGCACGGGCGGGGGAAGGTAGCGGAGACGGTGGTGGAGATACAGGACCGACACGGGGCGGCGAAGGAGATCGAGAGAAGCTTGCTAGAGTTGCACCAAGTGTTCTTGGACATGGCAGTGATGGTGGAAGCACAAGGGGAGAAAATGGATGACATTGAACACCATGTGATGAATGCTTCACAATATGTAAGAGATGGGAGTAAGGAGTTGAAGAGTGCTAAGGATTTGCAAAGGAGCAATAGGAAATGGATGTGCTTTGGGGTTTTGCTTTTGCTTATTATTATTTTGGTTGTTGTTATTCCTATTGCTGTTAGTTTTGGGAGTTCTTGA 927 48.0 MNDLMTQSFTSYVDLKKAAMKDIDLEAGFETVSSDTDNGDMGLFLEEAEKVKLEMGSIREILGKLQQANEETKSAHKPETLKSLRQTINGNIVTVLKKARSIRSKLEEMDRANDAKKRLSASKEGTAIYRTRIAVTNGLRKKLKELMMEFQTLRQRMMTEYKETVERRYFTVTGEHPEEEVIEKIISNGGEEFLGRAIEEHGRGKVAETVVEIQDRHGAAKEIERSLLELHQVFLDMAVMVEAQGEKMDDIEHHVMNASQYVRDGSKELKSAKDLQRSNRKWMCFGVLLLLIIILVVVIPIAVSFGSS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1539921 1542247 + Cp4.1LG19g01880.1 Cpe19g00189 485597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00189 308 SMART SynN_4 36 162 IPR006011 GO:0016020
Cpe19g00189 308 Coils Coil 102 122 - -
Cpe19g00189 308 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 301 - -
Cpe19g00189 308 Pfam SNARE domain 247 298 IPR000727 -
Cpe19g00189 308 Gene3D - 36 165 - -
Cpe19g00189 308 Pfam Syntaxin 44 245 IPR006011 GO:0016020
Cpe19g00189 308 CDD SNARE_syntaxin1-like 209 270 - -
Cpe19g00189 308 ProSitePatterns Syntaxin / epimorphin family signature. 216 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe19g00189 308 SMART tSNARE_6 205 272 IPR000727 -
Cpe19g00189 308 Gene3D - 205 306 - -
Cpe19g00189 308 PANTHER SYNTAXIN 4 301 IPR045242 -
Cpe19g00189 308 Coils Coil 136 156 - -
Cpe19g00189 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Cpe19g00189 308 SUPERFAMILY t-snare proteins 40 265 IPR010989 GO:0016020|GO:0016192
Cpe19g00189 308 CDD SynN 41 197 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00189 Cpe-Chr19:1539921 Cpe20g00409 Cpe-Chr20:2339171 1.18E-94 dispersed
Cpe05g00086 Cpe-Chr5:418371 Cpe19g00189 Cpe-Chr19:1539921 3.78E-19 transposed
Cpe10g00620 Cpe-Chr10:3594324 Cpe19g00189 Cpe-Chr19:1539921 1.16E-70 transposed
Cpe10g01038 Cpe-Chr10:6053022 Cpe19g00189 Cpe-Chr19:1539921 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00189 K08486 - csv:101220775 518.079