Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00213 ATGGCGACCAATTTCTGGTCGTTAGCATGCACTCGGTTTCCGAACAGCAGTAATCTGTTGCCGCGGCCTCATTATCCGTCCATGCCCAAATATCCGGCGGGGATTTCGCTACCGGAGAATAGGTTGCCGACGAATGAGTCGACGGCGTTCTTCTCCGTCACTGGAATGACCTGCTCTGCTTGTGCTGGCTCCGTCGAGAAGGCGATCAAACGACTCCCTGGAATTCGTGAAGCCGTCGTTGATGTTTTGAATGCTAAAGCTCGAGTCCAGTTTTACCCTAGCTTCGTTAATTTGGATCAAATATGTGAGGCAATTAACGATGTAGGCTTTGAAGCAAGTATAGTCAATGACGATATGATTGAAAGATGTCGAATTCATATAATTGGAATGACTTGCACTTCTTGCTCCAAAACTTTGGAATCTACAATACAAGCAATTCGTGGAGTTCAAAACGCCCAAGTTGCATTAGCCACGGAAGAAGCAGAAGTTTGTTTCGATCCAAGAATTTTAAACTACAATCAACTTCTCCAAGCCATTGAAGAATCTGGATTCGAAGCTTTACTTATTAGCACAGAAGAAGATGTAAGCAAGATACAGCTCCAAGTTGATGGAGTGAGATCTGAGAATTCAATGAGAGTGATTGGGAGCTCTCTGGAAGCACTTCCTGGAGTTCTAGGTATTAATATTGACCCTGCACTCAGCAAACTTTCATTGTCTTACAAGCCAAATGTCACCGGACCTCGGAATATAATCCAAGTGATTGAATCAACTGGATCTGGTCGTTTTAAGGCAACAATATTCCCTGAAGAACAGGGCAGAGAAGCCTATAAAAAGGAGGAAATTAAGCAATATTACCGATCATTCTTATGGAGTCTGATATTCACAATTCCAGTGTTTTTAAGCTCTATGGTCTTCACTTATATACCTGGTATTAAGGATGTGCTAGATGCCAAAATTGTCAATATGATGACTGTTGGGGAGCTGCTGAGGTGGGTGTTATCATCTCCCGTACAGTTCATTATTGGAAGGCGGTTCTATACAGGGTCTTACAAAGCATTGCGTCATGGTTCTGCTAATATGGATGTTTTGATTGCTTTGGGGACTAATGCAGCATACTTTTATTCAGTCTACATGGTATTAAGATCTGCAACCTCAAGTGATTTTAAGGCCACAGACTTCTTTGAGACCAGTTCAATGCTTATATCATTCATCCTTCTCGGGAAATATCTTGAGGTCTTCGCTAAGGGAAAAACATCAGAGGCTATTGTGAAGCTTATGAAGTTGGTGCCTGAAACAGCAACCTTGCTTACTTTTGATAATGATGGAAACGTCGTTAGGGAAGTAGAAATTGATAGTCGGTTGATACAAAAGAATGATGTAATTAAAGTCATTCCAGGGGCAAAGGTTGCTTCCGATGGAGTTGTTGTTTGGGGACAAAGTCATGTCAATGAAAGCATGATTACTGGGGAAGCCAAGCCAGTGGCAAAGAGAACGGATGATACGGTGATTGGAGGCACCTTGAATGAGAATGGTGTACTACATGTGAGGGCAACACACGTTGGATCTGAAAGCGCCCTTTCACAGATCGTGCGACTTGTTGAATCGGCTCAAATGGCCAAAGCTCCAGTTCAGAAAATTGCAGATCGCATCTCTAAGTTTTTTGTGCCAATGGTTATAGTCCTTTCATTGACAACATGGCTCGTCTGGTTTCTTACTGGGAAGTATGGTGGCTACCCAAAGTCCTGGATACCTTCTTCCATGGATAGCTTTGAGCTTGCTCTCCAGTTTGGCATTTCAGTTATGGTCATAGCATGCCCTTGTGCTTTGGGCCTGGCAACTCCAACTGCAGTCATGGTTGCAACAGGAGTTGGAGCCTCAAAAGGTGTTTTAATTAAAGGTGGCCAAGCATTAGAGAGTGCTCACAAGGTGAATTGTATTGTGTTCGACAAAACTGGAACTCTTACAGTCGGGAAGCCAGTTGTGGTGAAAACAAAGCTACTAAAAAATATGGTTCTGAAAGAATTCTATGAACTAGTTGCCGCAACTGAGGTAAACAGCGAGCATCCATTGGCCAAAGCCATTGTTGAATATGCTAAAAAGTTCAAAGCAGAGGACAATAACCAAACATGGCCTGAAGCACTAGATTTTATTTCCATTACTGGACATGGGGTAAAGGCCATCGTTCAAAACAAAGAAGTAGTTGCAGGCAACAAGAGTCTTATGTTAGATCAGAACATTTTCATACCCGTTGAAGCTGAAGAAATATTAAAAGAAATCGAAGAAATGGCTCAAACTGGAATTTTGGTATCCATTGATCGGAAACTGACCGGGGTTCTTGCCATATCTGATGCACTGAAACCAAGTGCTCGCGATGTCATTTCCATACTCGAAGCCATGAAAGTTAAATCCATCATGGTGACAGGTGATAATTGGGGGACGGCGAAGTCCATAGCCAATGAGGTTGGGATTGATGACATAATTGCAGTAGCTAAACCCGACATGAAAGCTGAGGAAGTGAAGAGACTACAGTCTTTGGGTCATACGGTGGCAATGGTAGGAGACGGGATCAACGACTCGCCAGCGCTTGTGGCTGCAGATGTCGGAATGGCCATTGGTGCAGGCACAGACATTGCAATTGAGGCAGCTGACATAGTCTTGATGAAAAGCAACTTGGAGGATGTCATAACCGCCATCGACCTTTCAAGAAAAACATTCTCCAGGATCCGTCTTAACTACATTTGGGCACTTGGTTACAATCTCCTCAGCATCCCTATCGCAGCCGGAGTCCTTTTCCCATCGACTCGGTTTCGGCTACCTCCATGGATTGCAGGAGCAGCAATGGCAGCCTCTTCTGTTAGTGTTGTTTGTAGTTCTCTCCAGCTCAAGTATTACAAAAGGCCCAAGAAGCTTGATACCCTTGAGATACAAGGCATTAGAGTTGTGTGA 2946 43.65 MATNFWSLACTRFPNSSNLLPRPHYPSMPKYPAGISLPENRLPTNESTAFFSVTGMTCSACAGSVEKAIKRLPGIREAVVDVLNAKARVQFYPSFVNLDQICEAINDVGFEASIVNDDMIERCRIHIIGMTCTSCSKTLESTIQAIRGVQNAQVALATEEAEVCFDPRILNYNQLLQAIEESGFEALLISTEEDVSKIQLQVDGVRSENSMRVIGSSLEALPGVLGINIDPALSKLSLSYKPNVTGPRNIIQVIESTGSGRFKATIFPEEQGREAYKKEEIKQYYRSFLWSLIFTIPVFLSSMVFTYIPGIKDVLDAKIVNMMTVGELLRWVLSSPVQFIIGRRFYTGSYKALRHGSANMDVLIALGTNAAYFYSVYMVLRSATSSDFKATDFFETSSMLISFILLGKYLEVFAKGKTSEAIVKLMKLVPETATLLTFDNDGNVVREVEIDSRLIQKNDVIKVIPGAKVASDGVVVWGQSHVNESMITGEAKPVAKRTDDTVIGGTLNENGVLHVRATHVGSESALSQIVRLVESAQMAKAPVQKIADRISKFFVPMVIVLSLTTWLVWFLTGKYGGYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVATGVGASKGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVKTKLLKNMVLKEFYELVAATEVNSEHPLAKAIVEYAKKFKAEDNNQTWPEALDFISITGHGVKAIVQNKEVVAGNKSLMLDQNIFIPVEAEEILKEIEEMAQTGILVSIDRKLTGVLAISDALKPSARDVISILEAMKVKSIMVTGDNWGTAKSIANEVGIDDIIAVAKPDMKAEEVKRLQSLGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLSIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLQLKYYKRPKKLDTLEIQGIRVV 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1745088 1751035 + Cp4.1LG19g02120.1 Cpe19g00213 485621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00213 981 Gene3D - 196 258 - -
Cpe19g00213 981 TIGRFAM TIGR00003: copper ion binding protein 125 186 IPR006122 GO:0005507
Cpe19g00213 981 TIGRFAM TIGR00003: copper ion binding protein 51 112 IPR006122 GO:0005507
Cpe19g00213 981 ProSiteProfiles Heavy-metal-associated domain profile. 122 188 IPR006121 GO:0046872
Cpe19g00213 981 Gene3D - 614 909 IPR023214 -
Cpe19g00213 981 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 1 972 - -
Cpe19g00213 981 Pfam E1-E2 ATPase 428 626 - -
Cpe19g00213 981 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 400 934 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe19g00213 981 SFLD C1.7: P-type atpase like 629 904 - -
Cpe19g00213 981 Pfam Heavy-metal-associated domain 51 110 IPR006121 GO:0046872
Cpe19g00213 981 Pfam Heavy-metal-associated domain 125 185 IPR006121 GO:0046872
Cpe19g00213 981 ProSiteProfiles Heavy-metal-associated domain profile. 48 114 IPR006121 GO:0046872
Cpe19g00213 981 CDD P-type_ATPase_Cu-like 286 948 - -
Cpe19g00213 981 CDD HMA 51 113 IPR006121 GO:0046872
Cpe19g00213 981 Gene3D - 120 193 - -
Cpe19g00213 981 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 360 961 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cpe19g00213 981 ProSitePatterns Heavy-metal-associated domain. 127 156 IPR017969 GO:0046872
Cpe19g00213 981 CDD HMA 199 265 IPR006121 GO:0046872
Cpe19g00213 981 SUPERFAMILY Calcium ATPase, transmembrane domain M 392 924 IPR023298 -
Cpe19g00213 981 SUPERFAMILY HMA, heavy metal-associated domain 121 194 IPR036163 GO:0046872
Cpe19g00213 981 Gene3D - 733 783 IPR023299 GO:0000166
Cpe19g00213 981 Gene3D - 654 732 IPR023299 GO:0000166
Cpe19g00213 981 Pfam haloacid dehalogenase-like hydrolase 643 866 - -
Cpe19g00213 981 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Cpe19g00213 981 SUPERFAMILY Calcium ATPase, transduction domain A 447 533 IPR008250 -
Cpe19g00213 981 CDD HMA 127 186 IPR006121 GO:0046872
Cpe19g00213 981 Gene3D - 415 537 - -
Cpe19g00213 981 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Cpe19g00213 981 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Cpe19g00213 981 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Cpe19g00213 981 PRINTS Copper-transporting ATPase 1 signature 145 166 - -
Cpe19g00213 981 PANTHER ATP7, ISOFORM B 1 972 - -
Cpe19g00213 981 ProSiteProfiles Heavy-metal-associated domain profile. 197 258 IPR006121 GO:0046872
Cpe19g00213 981 SUPERFAMILY HAD-like 646 958 IPR036412 -
Cpe19g00213 981 Gene3D - 43 115 - -
Cpe19g00213 981 SUPERFAMILY HMA, heavy metal-associated domain 193 259 IPR036163 GO:0046872
Cpe19g00213 981 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
Cpe19g00213 981 PRINTS P-type cation-transporting ATPase superfamily signature 647 661 - -
Cpe19g00213 981 PRINTS P-type cation-transporting ATPase superfamily signature 777 788 - -
Cpe19g00213 981 PRINTS P-type cation-transporting ATPase superfamily signature 799 809 - -
Cpe19g00213 981 PRINTS P-type cation-transporting ATPase superfamily signature 852 871 - -
Cpe19g00213 981 PRINTS P-type cation-transporting ATPase superfamily signature 875 887 - -
Cpe19g00213 981 ProSitePatterns E1-E2 ATPases phosphorylation site. 649 655 IPR018303 -
Cpe19g00213 981 SFLD p-type atpase 629 904 IPR044492 -
Cpe19g00213 981 SUPERFAMILY HMA, heavy metal-associated domain 43 117 IPR036163 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01196 Cpe-Chr5:8285892 Cpe19g00213 Cpe-Chr19:1745088 2.46E-48 dispersed
Cpe10g00022 Cpe-Chr10:158888 Cpe19g00213 Cpe-Chr19:1745088 2.63E-14 dispersed
Cpe19g00213 Cpe-Chr19:1745088 Cpe19g01198 Cpe-Chr19:8043954 1.37E-15 dispersed
Cpe05g00327 Cpe-Chr5:1821319 Cpe19g00213 Cpe-Chr19:1745088 0 transposed
Cpe05g01159 Cpe-Chr5:7875287 Cpe19g00213 Cpe-Chr19:1745088 0 transposed
Cpe06g00260 Cpe-Chr6:1392701 Cpe19g00213 Cpe-Chr19:1745088 7.56E-52 transposed
Cpe14g00212 Cpe-Chr14:1185043 Cpe19g00213 Cpe-Chr19:1745088 2.83E-107 transposed
Cpe10g01062 Cpe-Chr10:6338078 Cpe19g00213 Cpe-Chr19:1745088 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00213 K17686 - csv:101218801 1744.55