Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00231 ATGGACTTATTACAGTCTTTGGATCCTCAAATCCTTCTGGGTTCGGCTGTGGCTGTTTTAGCTCTTGCCTTTGGTGCTCTCTATTTGTTATCCTCGTCCAAGAAATCCAAATCCGGAGGTTGCTTGGATCCAGAGAATTTCAAGGAGTTTAAGCTTATCAAGCGTGCGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCAAGTTCTACTTCAGTTTTGGGCCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGATGTTATCAAACCTTATACACCTATTACTTTGGATTCTGATGTCGGATATTTTGAATTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCACACCATTTCCGACAGATGCGTGTCGGTGATTTTCTGTCTGTGAAAGGGCCCAAGGGGCGATTCAGGTATCAACCAGGCGAGGTCAGAGCATTTGGAATGCTCGCTGGAGGCTCTGGCATTACTCCTATGTATCAAGTTGCTCGAGCCATATTAGAAAATCCAAATGACAAGACGAAGGTACATCTCATTTATGCCAACGTCACCTACGAGGACATTCTTTTGAAGGAGGAGTTAGATCTTCTTGCCTCAAGGTACCCAGATAGCTTCAAGCTCTATTATGTTTTAAACCAGCCTCCTGAATCGTGGGATGGTGGCGTTGGATTCGTGACGAAGGAGATGATTCAAACCCATTGCCCTGCTCCTGCTTCTGATGTTCGGATTTTAAGATGTGGGCCACCACCAATGAACAAGGCCATGGCTGCTCATCTTGAAGCTCTTGGATACGCACCAGAGATGGTGTTCATGTTCTGA 846 45.51 MDLLQSLDPQILLGSAVAVLALAFGALYLLSSSKKSKSGGCLDPENFKEFKLIKRAQLSHNVAKFTFTLPSSTSVLGLPIGQHISCRGKDGQGEDVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLSVKGPKGRFRYQPGEVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLASRYPDSFKLYYVLNQPPESWDGGVGFVTKEMIQTHCPAPASDVRILRCGPPPMNKAMAAHLEALGYAPEMVFMF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1918564 1922731 + Cp4.1LG19g02370.1 Cpe19g00231 485639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00231 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 280 IPR039261 -
Cpe19g00231 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Cpe19g00231 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Cpe19g00231 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Cpe19g00231 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Cpe19g00231 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Cpe19g00231 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Cpe19g00231 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Cpe19g00231 281 CDD cyt_b5_reduct_like 50 281 - -
Cpe19g00231 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491
Cpe19g00231 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 281 IPR001834 GO:0016491
Cpe19g00231 281 Gene3D Translation factors 40 139 - -
Cpe19g00231 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491
Cpe19g00231 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Cpe19g00231 281 Gene3D - 140 281 IPR039261 -
Cpe19g00231 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00231 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101212569 501.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g01081 Cpe-Chr11:9023596 Cpe19g00231 Cpe-Chr19:1918564 5.24E-68 dispersed
Cpe08g01365 Cpe-Chr8:9811681 Cpe19g00231 Cpe-Chr19:1918564 1.35E-172 transposed
Cpe16g00938 Cpe-Chr16:8657691 Cpe19g00231 Cpe-Chr19:1918564 9.68E-132 transposed
Cpe10g01086 Cpe-Chr10:6608643 Cpe19g00231 Cpe-Chr19:1918564 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G53560 73.2 3.7e-54 208.0
Cpe08g00396 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Cpe03g01589 . 1 149 NADPH P450 reductases AT5G53560 61.7 2.1e-49 192.2
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G53560 62.4 5.4e-45 177.6
Cpe15g00137 . 4 131 NADPH P450 reductases AT5G53560 64.1 3.5e-44 174.9
Cpe05g00119 . 61 180 NADPH P450 reductases AT5G53560 59.5 2.6e-39 158.7
Cpe08g00396 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.3e-48 186.8
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.9e-46 181.4
Cpe15g00137 . 2 132 NADPH P450 reductases AT5G48810 63.2 1.9e-45 179.1
Cpe03g01589 . 1 148 NADPH P450 reductases AT5G48810 58.0 1.3e-44 176.4
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G48810 55.0 6.5e-41 164.1
Cpe05g00119 . 61 181 NADPH P450 reductases AT5G48810 58.1 7.9e-39 157.1
Cpe08g00396 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Cpe03g01589 . 22 149 NADPH P450 reductases AT2G32720 74.2 1.2e-47 186.4
Cpe12g00095 . 22 133 NADPH P450 reductases AT2G32720 75.9 6.0e-44 174.1
Cpe15g00137 . 21 132 NADPH P450 reductases AT2G32720 71.4 6.2e-41 164.1
Cpe05g00584 CCT 22 133 NADPH P450 reductases AT2G32720 66.1 5.2e-40 161.0
Cpe05g00119 . 83 181 NADPH P450 reductases AT2G32720 74.7 4.9e-38 154.5
Cpe11g00394 . 31 145 NADPH P450 reductases AT1G26340 61.3 3.8e-38 154.8
Cpe19g00231 . 2 281 NADPH P450 reductases AT5G17770 81.1 5.5e-132 467.6
Cpe08g01365 . 2 280 NADPH P450 reductases AT5G17770 79.3 4.8e-128 454.5
Cpe10g01086 . 5 276 NADPH P450 reductases AT5G17770 80.0 1.2e-126 449.9
Cpe16g00938 . 1 269 NADPH P450 reductases AT5G17770 65.3 1.0e-101 367.1
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G53560 73.2 3.7e-54 208.0
Cpe08g00396 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Cpe03g01589 . 1 149 NADPH P450 reductases AT5G53560 61.7 2.1e-49 192.2
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G53560 62.4 5.4e-45 177.6
Cpe15g00137 . 4 131 NADPH P450 reductases AT5G53560 64.1 3.5e-44 174.9
Cpe05g00119 . 61 180 NADPH P450 reductases AT5G53560 59.5 2.6e-39 158.7
Cpe08g00396 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.3e-48 186.8
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.9e-46 181.4
Cpe15g00137 . 2 132 NADPH P450 reductases AT5G48810 63.2 1.9e-45 179.1
Cpe03g01589 . 1 148 NADPH P450 reductases AT5G48810 58.0 1.3e-44 176.4
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G48810 55.0 6.5e-41 164.1
Cpe05g00119 . 61 181 NADPH P450 reductases AT5G48810 58.1 7.9e-39 157.1
Cpe08g00396 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Cpe03g01589 . 22 149 NADPH P450 reductases AT2G32720 74.2 1.2e-47 186.4
Cpe12g00095 . 22 133 NADPH P450 reductases AT2G32720 75.9 6.0e-44 174.1
Cpe15g00137 . 21 132 NADPH P450 reductases AT2G32720 71.4 6.2e-41 164.1
Cpe05g00584 CCT 22 133 NADPH P450 reductases AT2G32720 66.1 5.2e-40 161.0
Cpe05g00119 . 83 181 NADPH P450 reductases AT2G32720 74.7 4.9e-38 154.5
Cpe11g00394 . 31 145 NADPH P450 reductases AT1G26340 61.3 3.8e-38 154.8
Cpe19g00231 . 2 281 NADPH P450 reductases AT5G17770 81.1 5.5e-132 467.6
Cpe08g01365 . 2 280 NADPH P450 reductases AT5G17770 79.3 4.8e-128 454.5
Cpe10g01086 . 5 276 NADPH P450 reductases AT5G17770 80.0 1.2e-126 449.9
Cpe16g00938 . 1 269 NADPH P450 reductases AT5G17770 65.3 1.0e-101 367.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00231 Cpe_Chr19 FPKM 3.562734 4.378884 9.861355 8.423116 19.901815 22.103634 16.371763 1.715856 2.448385 1.818749