Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00246 ATGGCTTCAAGACCAGTAGTTCCCCAACAAATCAGAGGTGATGAAGCGATCGGCGGAGGAAAGCAGGTGAAGGGCGGGGCGGCGGTGGATGCGAGGAACCGCAGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAAATGACGCAAAGGCAAATCGCCCTATTACGAGGAGTTTCTGTGCTCAGTTGCTTGCCAATGCCCAAGCTGCTGCAAAAGCTGAAAATAATAAGAAATTAGTGCCTGTCAGTGTAGATGGGGCTGCTCCCATTCTTAATGATGGTATTGTGGCTGTTCGGAAGCCAAGAGCACCCAAGGCAGCACCCAAGAAAGTTGTTTCCAAACCGAAAGCGGAGGTGATCGAGATAAGCCCGGATACGGTCGAAAAAGATCGGGGCAAGGAAGTGAAATGTGGTAACAAGAAAAAGGAAGGAGAAGGGGTATCAAAGAAGAAGGCACAGACTCTCACCGCAGTCATGACGGCTAGAAGCAAGGCTGCTTGTGGTGTAACCAAGAAACCAAAGGAACAGATAATTGACATTGACGCAGCAGATGTTGGAAATGAGTTGGCAGAAGTGGAATATGTTGAGGACATTTATAAGTTCTATAAGGAAGTTGAGAATGAGAGTAGGCCTCATGACTATATGGATTCACAACCGGAGATAAACACTTCAATGAGAGCAATATTGGTGGATTGGTTGGTTGATGTCCACAACAAGTTCGAGCTTTCCCCCGAAACATTCTACCTCACCATCAACATAATTGATCGCTTCCTTGCGAGGAAGGCAGTCCCAAGAAGGGAATTGCAGTTGTTGGGTATTGGGGCAATGCTCATAGCCTCCAAATACGAGGAGATCTGGGCGCCAGAGGTAAACGACTTCGTGTGCCTTTCAGATAGAGCGTACACGAATGAACAGATACTAATGATGGAGAAAAGGATACTTGGGAAGCTGGAATGGACCATGACTCTGCCTACTCCCTATGTTTTCCTCGCTCGGTTCATCAAGGCGTCGAAGGACTCCGATCACGAGATGGAAAATCTGGTATATTTTCTGGCAGAACTTGGCATAATGCATTACAACACCTCAATAATGTACAGCCCATCAATGATTGCCGCCTCGGCAGTCTATGCCGCTCGATGCACGCTGAAGAAAAGCCCTGGTTGGGATGAGACCCTCAAACTGCACACTGGCTTCACAGAGCCTCAACTGATTGATTGTGCAAAGCATTTGGTGGGATTCCATGGAGCAGCAAGCAAGAACAAGCTTCAAGTAATATACAGAAAGTACTCCAGCTCCGAGAGGGGAGCGGTAGCGTTGCTTCAGCCACCCAAAGCTCTCTTGGTGGTGCCTCCTAATGGTCATTGA 1371 47.99 MASRPVVPQQIRGDEAIGGGKQVKGGAAVDARNRRALGDIGNLVTVRGNDAKANRPITRSFCAQLLANAQAAAKAENNKKLVPVSVDGAAPILNDGIVAVRKPRAPKAAPKKVVSKPKAEVIEISPDTVEKDRGKEVKCGNKKKEGEGVSKKKAQTLTAVMTARSKAACGVTKKPKEQIIDIDAADVGNELAEVEYVEDIYKFYKEVENESRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLARKAVPRRELQLLGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTNEQILMMEKRILGKLEWTMTLPTPYVFLARFIKASKDSDHEMENLVYFLAELGIMHYNTSIMYSPSMIAASAVYAARCTLKKSPGWDETLKLHTGFTEPQLIDCAKHLVGFHGAASKNKLQVIYRKYSSSERGAVALLQPPKALLVVPPNGH 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2009694 2013052 + Cp4.1LG19g02380.1 Cpe19g00246 485654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00246 456 CDD CYCLIN 324 413 IPR013763 -
Cpe19g00246 456 SMART cyclin_7 330 414 IPR013763 -
Cpe19g00246 456 SMART cyclin_7 233 317 IPR013763 -
Cpe19g00246 456 MobiDBLite consensus disorder prediction 1 25 - -
Cpe19g00246 456 SUPERFAMILY Cyclin-like 326 446 IPR036915 -
Cpe19g00246 456 CDD CYCLIN 227 316 IPR013763 -
Cpe19g00246 456 ProSitePatterns Cyclins signature. 228 259 IPR006671 -
Cpe19g00246 456 Pfam Cyclin, C-terminal domain 326 444 IPR004367 -
Cpe19g00246 456 Pfam Cyclin, N-terminal domain 199 323 IPR006671 -
Cpe19g00246 456 SMART Cyclin_C_2 326 445 IPR004367 -
Cpe19g00246 456 Gene3D - 213 324 - -
Cpe19g00246 456 PANTHER CYCLINS 21 450 IPR039361 -
Cpe19g00246 456 PIRSF Cyclin_A_B_D_E 1 454 IPR039361 -
Cpe19g00246 456 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 21 450 - -
Cpe19g00246 456 SUPERFAMILY Cyclin-like 188 323 IPR036915 -
Cpe19g00246 456 Gene3D - 199 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00246 Cpe-Chr19:2009694 Cpe19g00895 Cpe-Chr19:6525694 1.79E-80 dispersed
Cpe20g00001 Cpe-Chr20:590 Cpe19g00246 Cpe-Chr19:2009694 7.00E-42 dispersed
Cpe19g00245 Cpe-Chr19:2004731 Cpe19g00246 Cpe-Chr19:2009694 0 tandem
Cpe19g00246 Cpe-Chr19:2009694 Cpe19g00247 Cpe-Chr19:2025317 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00246 K21777 - csv:101217210 716.457