Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00248 ATGAGGGAAGAGCATTCGAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCAGATGAACTCATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTAGCTTTCGATATTCAAAATCCCACCAATTGCAGTCCGCCGTTGCCTTGCCCATCTCCGCCGCTTTCGAATCCCCTACCCGGCTCCGGCAACGGAATTCCGCTGCCCAACTCGGGGGATTTCGGCGATTCCGCTGATTTAGGCTCCGGCGCCGGCAGCGACGAACCAGCCCGGACCCTCAAGCGGCCACGCCTAGTCTGGACTCCACAGCTCCACAAGCGATTCGTTGACGCTGTTGCCCATTTGGGGATCAAAAATGCTGTCCCTAAGACCATAATGCAGCTCATGAGTGTTGATGGCTTAACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGTCTCTATCTCAAGCGTATGCAGGGTTTATCCAGTGGGGGTGGCGGCGCCGCCGCAGCTGGCTTGGTTGCTTCCTCTGATCCCGCCACCGACCATTTGTGCGCTAGCTCCCCTGTTCCACCCCATTTGCTTCACTCCGCTCGTGCTAGTTCAGACCACTTCATGCCCTTTGTTCCCATGGCCACTCTACAGCAGCACCACCACCACCTGCAGCAGATGGCCGCAGCTTCTGTCGTCGCCCACCCTCAGCTCCAGCCCCCCTATCATCGTGGGCAGTTTGGGTCACCATCAAACGGCCAATTTGAGCATCCATTTTTAGGTAGACAGTCCCAACCTATCCATAGAATGGGGGCACCAGTGCATAATTCAGTTCCTAATTACATTGAGGATTTGGAATCAGGCAATGCCAGTGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA 900 54.22 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPTNCSPPLPCPSPPLSNPLPGSGNGIPLPNSGDFGDSADLGSGAGSDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGAAAAGLVASSDPATDHLCASSPVPPHLLHSARASSDHFMPFVPMATLQQHHHHLQQMAAASVVAHPQLQPPYHRGQFGSPSNGQFEHPFLGRQSQPIHRMGAPVHNSVPNYIEDLESGNASGGRKVLTLFPTGDD 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2031934 2032833 + Cp4.1LG19g02310.1 Cpe19g00248 485656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00248 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cpe19g00248 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Cpe19g00248 299 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 299 IPR044841 GO:0003700|GO:0006355
Cpe19g00248 299 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Cpe19g00248 299 Gene3D - 94 156 - -
Cpe19g00248 299 MobiDBLite consensus disorder prediction 47 62 - -
Cpe19g00248 299 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 299 - -
Cpe19g00248 299 MobiDBLite consensus disorder prediction 279 299 - -
Cpe19g00248 299 MobiDBLite consensus disorder prediction 47 96 - -
Cpe19g00248 299 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00415 Cpe-Chr3:2320052 Cpe19g00248 Cpe-Chr19:2031934 7.76E-109 dispersed
Cpe10g01100 Cpe-Chr10:7054606 Cpe19g00248 Cpe-Chr19:2031934 1.30E-159 dispersed
Cpe16g00629 Cpe-Chr16:6781737 Cpe19g00248 Cpe-Chr19:2031934 9.07E-32 dispersed
Cpe19g00248 Cpe-Chr19:2031934 Cpe20g00834 Cpe-Chr20:7534369 1.25E-41 dispersed
Cpe19g00248 Cpe-Chr19:2031934 Cpe08g01347 Cpe-Chr8:9711536 8.10E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50963 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00248 - - csv:101216969 480.33