Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe19g00248 | ATGAGGGAAGAGCATTCGAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCAGATGAACTCATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTAGCTTTCGATATTCAAAATCCCACCAATTGCAGTCCGCCGTTGCCTTGCCCATCTCCGCCGCTTTCGAATCCCCTACCCGGCTCCGGCAACGGAATTCCGCTGCCCAACTCGGGGGATTTCGGCGATTCCGCTGATTTAGGCTCCGGCGCCGGCAGCGACGAACCAGCCCGGACCCTCAAGCGGCCACGCCTAGTCTGGACTCCACAGCTCCACAAGCGATTCGTTGACGCTGTTGCCCATTTGGGGATCAAAAATGCTGTCCCTAAGACCATAATGCAGCTCATGAGTGTTGATGGCTTAACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGTCTCTATCTCAAGCGTATGCAGGGTTTATCCAGTGGGGGTGGCGGCGCCGCCGCAGCTGGCTTGGTTGCTTCCTCTGATCCCGCCACCGACCATTTGTGCGCTAGCTCCCCTGTTCCACCCCATTTGCTTCACTCCGCTCGTGCTAGTTCAGACCACTTCATGCCCTTTGTTCCCATGGCCACTCTACAGCAGCACCACCACCACCTGCAGCAGATGGCCGCAGCTTCTGTCGTCGCCCACCCTCAGCTCCAGCCCCCCTATCATCGTGGGCAGTTTGGGTCACCATCAAACGGCCAATTTGAGCATCCATTTTTAGGTAGACAGTCCCAACCTATCCATAGAATGGGGGCACCAGTGCATAATTCAGTTCCTAATTACATTGAGGATTTGGAATCAGGCAATGCCAGTGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA | 900 | 54.22 | MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPTNCSPPLPCPSPPLSNPLPGSGNGIPLPNSGDFGDSADLGSGAGSDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGAAAAGLVASSDPATDHLCASSPVPPHLLHSARASSDHFMPFVPMATLQQHHHHLQQMAAASVVAHPQLQPPYHRGQFGSPSNGQFEHPFLGRQSQPIHRMGAPVHNSVPNYIEDLESGNASGGRKVLTLFPTGDD | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 2031934 | 2032833 | + | Cp4.1LG19g02310.1 | Cpe19g00248 | 485656 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe19g00248 | 299 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 102 | 153 | IPR017930 | - | |
Cpe19g00248 | 299 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 98 | 150 | IPR006447 | GO:0003677 | |
Cpe19g00248 | 299 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 299 | IPR044841 | GO:0003700|GO:0006355 | |
Cpe19g00248 | 299 | Pfam | Myb-like DNA-binding domain | 101 | 149 | IPR001005 | - | |
Cpe19g00248 | 299 | Gene3D | - | 94 | 156 | - | - | |
Cpe19g00248 | 299 | MobiDBLite | consensus disorder prediction | 47 | 62 | - | - | |
Cpe19g00248 | 299 | PANTHER | HOMEODOMAIN-LIKE PROTEIN-RELATED | 1 | 299 | - | - | |
Cpe19g00248 | 299 | MobiDBLite | consensus disorder prediction | 279 | 299 | - | - | |
Cpe19g00248 | 299 | MobiDBLite | consensus disorder prediction | 47 | 96 | - | - | |
Cpe19g00248 | 299 | SUPERFAMILY | Homeodomain-like | 94 | 154 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00415 | Cpe-Chr3:2320052 | Cpe19g00248 | Cpe-Chr19:2031934 | 7.76E-109 | dispersed | |
Cpe10g01100 | Cpe-Chr10:7054606 | Cpe19g00248 | Cpe-Chr19:2031934 | 1.30E-159 | dispersed | |
Cpe16g00629 | Cpe-Chr16:6781737 | Cpe19g00248 | Cpe-Chr19:2031934 | 9.07E-32 | dispersed | |
Cpe19g00248 | Cpe-Chr19:2031934 | Cpe20g00834 | Cpe-Chr20:7534369 | 1.25E-41 | dispersed | |
Cpe19g00248 | Cpe-Chr19:2031934 | Cpe08g01347 | Cpe-Chr8:9711536 | 8.10E-120 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50963 | PF00249 | Myb_DNA-binding | 2.20E-08 | CL0123 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe19g00248 | - | - | csv:101216969 | 480.33 |