Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00268 ATGACAACAACCGTCACGCACTCTCCAGATTATCGCCCCGAAATTTCAGTAATCCCGCCCACCCGCGACGGCCTGTCCTTCTGGCAGTTCATGATCGCCGGATCAATTTCAGGGTCTGTCGAGCACATGGCCATGTTTCCAGTGGACACACTCAAGACCCGAATCCAAGCCCTTGCCGGATCATCCACCCTCCGACAAGCACTCGCTTCGATTCTCAAATCGGAAGGTCCAGCCGGGCTCTACCGTGGAATCGGAGCAATGGGTCTCGGAGCAGGACCTGCACACGCCGTATACTTCTCTGTATACGAATTCTGCAAACAAAGATTTTCAATTGGGAATCCCAACAACCCATTAGCCCACGCCATTTCTGGAGTCTGTGCAACTGTGGCGAGCGACGCCGCGTTGACGCCGATGGATGTGGTGAAACAGAGGCTGCAATTGAAGAGCAGTCCTTATAAGGGAGTGAGGGACTGTGCGAGGAGGATTTTGGTTGAGGAAGGAATTGGGGCGTTCTATGCTTCTTATTGGACTACTGTTTTGATGAATGCCCCGTACACGGCTGCCCATTTTTCCATTTATGAAGCAGTGAAAAGGGGTTTGAAGGAGGGCTCGCCGGGAAGCGATGGCGGGGAGGGGTTGGTTGTTCATGCTACGGCTGGTGCGGCTGCTGGGTCTCTTGCTGCTGGTCTTACAACGCCATTAGACGTAGTGAAAACTCGGCTGCAGTGCCAGGGAGTGTGTGGGTGCGACAGATTTTCAAGCAGTTCAATAAGATCTGTGGTTAGGCATGTGGTGGAGAAGGATGGGAAGAGCGGGTTGATGAGAGGGTGGATTCCAAGGATGCTGTTCCATGCGCCTGCTGCTGCCATTGCCTGGTCCACTTATGAAGCCTCAAAGACATTGTTCCAACACCTCCACAATCACAACAATTAG 933 52.95 MTTTVTHSPDYRPEISVIPPTRDGLSFWQFMIAGSISGSVEHMAMFPVDTLKTRIQALAGSSTLRQALASILKSEGPAGLYRGIGAMGLGAGPAHAVYFSVYEFCKQRFSIGNPNNPLAHAISGVCATVASDAALTPMDVVKQRLQLKSSPYKGVRDCARRILVEEGIGAFYASYWTTVLMNAPYTAAHFSIYEAVKRGLKEGSPGSDGGEGLVVHATAGAAAGSLAAGLTTPLDVVKTRLQCQGVCGCDRFSSSSIRSVVRHVVEKDGKSGLMRGWIPRMLFHAPAAAIAWSTYEASKTLFQHLHNHNN 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2232260 2233587 + Cp4.1LG19g02560.1 Cpe19g00268 485676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00268 310 SUPERFAMILY Mitochondrial carrier 24 296 IPR023395 -
Cpe19g00268 310 Gene3D Mitochondrial carrier domain 5 203 IPR023395 -
Cpe19g00268 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 115 199 IPR018108 -
Cpe19g00268 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 25 108 IPR018108 -
Cpe19g00268 310 PANTHER MITOFERRIN-LIKE 8 309 - -
Cpe19g00268 310 PRINTS Mitochondrial carrier protein signature 30 43 IPR002067 GO:0055085
Cpe19g00268 310 PRINTS Mitochondrial carrier protein signature 43 57 IPR002067 GO:0055085
Cpe19g00268 310 PRINTS Mitochondrial carrier protein signature 130 148 IPR002067 GO:0055085
Cpe19g00268 310 PRINTS Mitochondrial carrier protein signature 172 190 IPR002067 GO:0055085
Cpe19g00268 310 PRINTS Mitochondrial carrier protein signature 220 242 IPR002067 GO:0055085
Cpe19g00268 310 PANTHER MITOFERRIN-1-RELATED 8 309 - -
Cpe19g00268 310 Pfam Mitochondrial carrier protein 25 109 IPR018108 -
Cpe19g00268 310 Pfam Mitochondrial carrier protein 115 202 IPR018108 -
Cpe19g00268 310 Pfam Mitochondrial carrier protein 213 304 IPR018108 -
Cpe19g00268 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 301 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00987 Cpe-Chr5:6421710 Cpe19g00268 Cpe-Chr19:2232260 4.15E-144 dispersed
Cpe16g00674 Cpe-Chr16:7025832 Cpe19g00268 Cpe-Chr19:2232260 1.20E-143 dispersed
Cpe18g00704 Cpe-Chr18:6965984 Cpe19g00268 Cpe-Chr19:2232260 8.72E-32 dispersed
Cpe10g00970 Cpe-Chr10:5487159 Cpe19g00268 Cpe-Chr19:2232260 7.41E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00268 K15113 - csv:101210464 505.368