Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00292 CCGTCAGATGGATTCGTCTCACAATCCAACGGACATAAAATCCTCACGAACAGATTATGTGGCAATCGCCGATCACAATACCCTTTTCAAAACCACATAAAATCCGAACCACAATCCCTACTTCCATCTCATTCTCCTTCCTCAATCCCCCGTTCTCGACTCGCCGTCGTAATGGCCGCCACTTCCGCCGCCACCTCCTCCTTCATCGGAACACGCCTCGCCGACGTGCGGTCAAGTTCCGGCCGAGTCCAAGCCCGATTCTCATTCGGCAAAAAGAAAAGCCCGGCGAAGAAATCGCCTTCGTCAAAGCAGATTCCCGACCGACCTCTATGGTTCCCCGGAGCCAAGGCGCCGGAATGGCTCGACGGAAGCTTGGTCGGCGACTACGGATTCGATCCGTTCGGATTGGGGAAACCAGCAGAGTATCTGCAATACGATTTGGACTCGTTGGATCAGAATCTGGCGAAGAATGTGGCTGGAGATCTAATAGGGACGAGATTTGAGAATTCCGAAGTGAAATCGACGCCGTTTCAACCGTACACGGAGGTTTTTGGATTACAGAGATTTCGTGAGTGCGAGCTGATCCATGGAAGATGGGCAATGCTAGCAACCCTCGGCGCTCTCACCGTCGAATGGCTCACTGGCCCGCTTCCGTTCTCGCTCACGGCATTGATCTGGATCGAAGTTCTGGTGATCGGATACATCGAGTTTCAGAGGAACGCGGAGCTAGAGCCGGAGAAGAGATTGTACCCTGGAGGGAAGTTTTTCGACCCGCTGGGGTTGGCGGAGGATCCTGAGAAGAAAGCTGTTCTTCAACTGGCTGAGATCAAACACGCTCGCCTCGCCATGGTTGCCTTCCTTGGGTTCGCTGTTCAAGCTGCTGTGACGGGGAAAGGACCGCTCAATAACTGGGCCACCCATCTCAGCGACCCCCTCCACACCACCATCATTGACAACTTCTCCTCCTCTTCCTAA 975 53.85 PSDGFVSQSNGHKILTNRLCGNRRSQYPFQNHIKSEPQSLLPSHSPSSIPRSRLAVVMAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGPLPFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSSS 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2526940 2528401 - Cp4.1LG19g03090.1 Cpe19g00292 485700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00292 324 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 216 323 - -
Cpe19g00292 324 Gene3D Chlorophyll a/b binding protein domain 108 215 - -
Cpe19g00292 324 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 58 215 - -
Cpe19g00292 324 Gene3D Chlorophyll a/b binding protein domain 216 324 - -
Cpe19g00292 324 MobiDBLite consensus disorder prediction 87 108 - -
Cpe19g00292 324 SUPERFAMILY Chlorophyll a-b binding protein 104 321 - -
Cpe19g00292 324 Pfam Chlorophyll A-B binding protein 117 293 IPR022796 -
Cpe19g00292 324 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 216 323 IPR001344 GO:0009765|GO:0016020
Cpe19g00292 324 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 58 215 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00292 Cpe-Chr19:2526940 Cpe04g01009 Cpe-Chr4:9034391 4.18E-36 dispersed
Cpe10g00945 Cpe-Chr10:5300445 Cpe19g00292 Cpe-Chr19:2526940 1.02E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00292 K08915 - csv:101208740 486.493