Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00305 ATGGCGGCTTTGGAGACAGCCGGAGTTGATTTGGAGGAAGGAGGTCGTGGTGGTCACGGCGGACGGCGGGCGGAGGCGGGTGAAGTGAAGGTGCATTCAGAGAGGGATTGTAGGATTTGCCATTTGGGGTTGGAGAGCAACAGTAGTGAGTGTGGAACTGCAATTGAATTGGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAAGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGTCATTCTATTGTACAAAATGTAGGAGGAGTACATGAACTCGAACAAATGGAGCAACTCCACGAGTTAAACAATGGGACGCTATCGACAACCACGGTTGCAGCATCGGTGGCTGCTCCCGATGGTGGTCGGAGGTTTTGGCAGGTTCATCGAGTACTGAATTTTCTTCTTGCTTGTATTGTATTTGCTTTTGTCATATCTTGGTTGTTCCATTTCAATATGCGGTCATAA 492 47.76 MAALETAGVDLEEGGRGGHGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTVAASVAAPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2654666 2656429 + Cp4.1LG19g02920.1 Cpe19g00305 485713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00305 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
Cpe19g00305 163 PANTHER ZINC FINGER, RING-CH-TYPE 28 162 - -
Cpe19g00305 163 SUPERFAMILY RING/U-box 33 92 - -
Cpe19g00305 163 MobiDBLite consensus disorder prediction 1 27 - -
Cpe19g00305 163 SMART ringv_2 36 89 IPR011016 GO:0008270
Cpe19g00305 163 Pfam RING-variant domain 37 88 IPR011016 GO:0008270
Cpe19g00305 163 CDD RING_CH-C4HC3_MARCH 37 89 - -
Cpe19g00305 163 ProSiteProfiles Zinc finger RING-CH-type profile. 29 95 IPR011016 GO:0008270
Cpe19g00305 163 PANTHER OS01G0850200 PROTEIN 28 162 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g01193 Cpe19g00305 CCT
Cpe08g01193 Cpe19g00305 ECH
Cpe03g00081 Cpe19g00305 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g01080 Cpe-Chr13:8732164 Cpe19g00305 Cpe-Chr19:2654666 5.18E-38 dispersed
Cpe19g00305 Cpe-Chr19:2654666 Cpe20g00846 Cpe-Chr20:7608385 2.70E-33 dispersed
Cpe01g02534 Cpe-Chr1:20756211 Cpe19g00305 Cpe-Chr19:2654666 2.84E-57 wgd
Cpe19g00305 Cpe-Chr19:2654666 Cpe03g00081 Cpe-Chr3:432033 1.81E-61 wgd
Cpe19g00305 Cpe-Chr19:2654666 Cpe08g01193 Cpe-Chr8:8780053 1.03E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00305 - - mcha:111019441 221.861