Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00315 ATGGCGGAGGAGGGTTTTGAAGTGTACCATGTCCCACACCAGAGCTGCAGAGATAAGCTTCGTGTGGGAATTGCAAACAATAATCATAATTCTCACATCGCCGCTGCTTTGCTTCCTTTATATCATCCTCCTTCTTTGATCTCCTCCCACTTTGATTCCCACCCACTTCCTCAAAATCCCTCTTTTCATTACCCACCTCCTCCTCCTCCGCCCACCGCCGCCGCCACCTCCGCCCATGTCCCCCCGCTCCTCCCTGACCAACCCTTGTCCCTTGACCTCAACCTCCAGCAGCGCTACGCCTCTGCCCTCCCTTTTGTTGGCTACTCCGCCTCCCTTTTGAAAGCCTCCAAATTCTTGAAGCCCGCTCAGCAGCTGCTTCATGACCTGTTTGACAACTCGCCGCCGGATCCCCTCCTCCTTGACCCTCTTCTTGAAAGCTTGGCCGGTGATATTCCTGATCCGATTACCTCTACCGACGACGACGGCGGCGCCGACAGCCGGAGGAAAAAATCCAGGCTTGTTACCATGCTGGACGAGATGCAAGCTGTGGTTACAACATTTGAATACGCTGCAGGGCTTGGCAATGCAGCGCCCTACATGAACTTGGCCGTAACAGCCATGTTTAAGCATTTCAAATTCTTAAAGAACACCATTGCCGACCAGCTCCAATTCAACAAGAAGAATCAGCAGCCTTACAACCCATATTGCCAAACATCCATTCACAACAACAATAATGCACCATTCGTCAACCACCAACCCGTTTGGCGACCTCAAAGAGGCCTCCCGGAGAGCGCTGTCACTGTCCTCCGAGCGTGGCTCTTCGAACATTTCCTTCATCCCTATCCTACTGACACGGATAAGCTCATGCTGGCTAGCCAAACTGGTCTCTCGCGAAGCCAGGTATCAAATTGGTTTATAAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTGGAAGAAATCCACATGCTAGAAACAAGGCAAGCTCGGAAATCTCATCAGAACAACGACAACGACGACAACAACGACAACAACGATCATATTTCATCCCACAACGGCAATAATAACAATGCATCTTCATCACATCAAGATCACAACCAACTGAACTTGTCCAACTCCAATTTCATTCCGACCCACCACCCTCATGTGGCTGCAGGAGCCGCCCATATGGGCGGTGGCGGGGGCGGGGGAAACGTTTCCTTAACTCTGGGGCTCCACCAGAATTACGGCGGGATCACTCTCACGGAACCGTTTCCGATCAATGCAGCTCAGCATTTTAACTTTGGGTTAGAAGGCAATGGTGAAGGGTTTGTAAATGAGTGGTTTTAA 1326 50.98 MAEEGFEVYHVPHQSCRDKLRVGIANNNHNSHIAAALLPLYHPPSLISSHFDSHPLPQNPSFHYPPPPPPPTAAATSAHVPPLLPDQPLSLDLNLQQRYASALPFVGYSASLLKASKFLKPAQQLLHDLFDNSPPDPLLLDPLLESLAGDIPDPITSTDDDGGADSRRKKSRLVTMLDEMQAVVTTFEYAAGLGNAAPYMNLAVTAMFKHFKFLKNTIADQLQFNKKNQQPYNPYCQTSIHNNNNAPFVNHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLASQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQARKSHQNNDNDDNNDNNDHISSHNGNNNNASSSHQDHNQLNLSNSNFIPTHHPHVAAGAAHMGGGGGGGNVSLTLGLHQNYGGITLTEPFPINAAQHFNFGLEGNGEGFVNEWF 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2732723 2735063 - Cp4.1LG19g03120.1 Cpe19g00315 485723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00315 441 Pfam Associated with HOX 175 219 IPR006563 -
Cpe19g00315 441 Gene3D - 258 320 - -
Cpe19g00315 441 SMART prehox3 106 220 IPR006563 -
Cpe19g00315 441 MobiDBLite consensus disorder prediction 346 377 - -
Cpe19g00315 441 CDD homeodomain 255 316 IPR001356 GO:0003677
Cpe19g00315 441 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 419 - -
Cpe19g00315 441 MobiDBLite consensus disorder prediction 57 80 - -
Cpe19g00315 441 Pfam Homeobox KN domain 272 311 IPR008422 GO:0003677|GO:0006355
Cpe19g00315 441 MobiDBLite consensus disorder prediction 150 169 - -
Cpe19g00315 441 MobiDBLite consensus disorder prediction 327 389 - -
Cpe19g00315 441 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 83 419 - -
Cpe19g00315 441 SUPERFAMILY Homeodomain-like 257 322 IPR009057 -
Cpe19g00315 441 MobiDBLite consensus disorder prediction 59 76 - -
Cpe19g00315 441 SMART HOX_1 255 319 IPR001356 GO:0003677
Cpe19g00315 441 MobiDBLite consensus disorder prediction 327 345 - -
Cpe19g00315 441 ProSiteProfiles 'Homeobox' domain profile. 252 315 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00089 Cpe-Chr3:464228 Cpe19g00315 Cpe-Chr19:2732723 2.51E-90 dispersed
Cpe08g01183 Cpe-Chr8:8741990 Cpe19g00315 Cpe-Chr19:2732723 5.98E-81 dispersed
Cpe19g00315 Cpe-Chr19:2732723 Cpe20g00740 Cpe-Chr20:6328594 9.57E-57 dispersed
Cpe10g00915 Cpe-Chr10:5106944 Cpe19g00315 Cpe-Chr19:2732723 1.68E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50969 PF07526 POX 9.20E-12 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00315 - - cmos:111453568 478.404